Analysis of interatomic Contacts of Structural Units in PDB entry:
3NOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NOJ entry

There is 1 chain in PDB entry 3NOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LEU 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3NOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
30 38Right-handed alpha
Helix 3
3
A
72 79Right-handed alpha
Helix 4
4
A
101 111Right-handed alpha
Helix 5
5
A
124 132Right-handed alpha
Helix 6
6
A
181 183Right-handed 310
Helix 7
7
A
184 209Right-handed alpha
Helix 8
8
A
211 216Right-handed alpha
Helix 9
9
A
218 226Right-handed alpha
Helix 10
10
A
232 236Right-handed 310
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There are 3 sheets in PDB entry 3NOJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
152 153parallel
Strand 3
A
57 66anti-parallel
Strand 4
A
85 91parallel
Strand 5
A
115 122parallel
Strand 6
A
134 140parallel
Strand 7
A
49 50anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
152 153parallel
Strand 3
A
57 66anti-parallel
Strand 4
A
169 173anti-parallel
Strand 5
A
176 180anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
162 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il