Analysis of interatomic Contacts of Structural Units in PDB entry:
3NOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NOT entry

There is 1 chain in PDB entry 3NOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ILE 4HIS 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3NOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
11 15Right-handed 310
Helix 2
2
C
44 49Right-handed alpha
Helix 3
3
C
65 77Right-handed alpha
Helix 4
4
C
118 132Right-handed alpha
Helix 5
5
C
133 135Right-handed 310
Helix 6
6
C
139 156Right-handed alpha
Helix 7
7
C
191 195Right-handed 310
Helix 8
8
C
196 206Right-handed alpha
Helix 9
9
C
244 255Right-handed alpha
Helix 10
10
C
285 333Right-handed alpha
Helix 11
11
C
334 340Right-handed alpha
Helix 12
12
C
345 350Right-handed alpha
Helix 13
13
C
370 381Right-handed alpha
Helix 14
14
C
382 384Right-handed 310
Helix 15
15
C
451 454Right-handed 310
Helix 16
16
C
455 468Right-handed alpha
Helix 17
17
C
475 496Right-handed alpha
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There are 3 sheets in PDB entry 3NOT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 23first strand
Strand 2
C
219 222anti-parallel
Strand 3
C
38 42anti-parallel
Strand 4
C
27 32anti-parallel
Strand 5
C
105 112anti-parallel
Strand 6
C
93 102anti-parallel
Strand 7
C
83 90anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 190first strand
Strand 2
C
171 178anti-parallel
Strand 3
C
159 165anti-parallel
Strand 4
C
269 278anti-parallel
Strand 5
C
258 266anti-parallel
Strand 6
C
208 211anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 366first strand
Strand 2
C
354 359anti-parallel
Strand 3
C
422 428anti-parallel
Strand 4
C
410 417anti-parallel
Strand 5
C
389 392anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il