Analysis of interatomic Contacts of Structural Units in PDB entry:
3NQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NQ5 entry

There are 2 chains in PDB entry 3NQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ILE 288
B
 LYS 4ILE 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 3NQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
15 32Right-handed alpha
Helix 3
3
A
33 47Right-handed alpha
Helix 4
4
A
64 84Right-handed alpha
Helix 5
5
A
93 98Right-handed alpha
Helix 6
6
A
102 110Right-handed 310
Helix 7
7
A
119 123Right-handed 310
Helix 8
8
A
164 172Right-handed alpha
Helix 9
9
A
189 196Right-handed alpha
Helix 10
10
A
202 212Right-handed alpha
Helix 11
11
A
213 217Right-handed 310
Helix 12
12
A
220 224Right-handed 310
Helix 13
13
A
225 245Right-handed alpha
Helix 14
14
A
272 277Right-handed alpha
Helix 15
15
A
278 283Right-handed alpha
Helix 16
16
B
10 14Right-handed 310
Helix 17
17
B
15 32Right-handed alpha
Helix 18
18
B
33 48Right-handed alpha
Helix 19
19
B
64 84Right-handed alpha
Helix 20
20
B
93 98Right-handed alpha
Helix 21
21
B
102 110Right-handed 310
Helix 22
22
B
119 123Right-handed 310
Helix 23
23
B
164 170Right-handed alpha
Helix 24
24
B
189 196Right-handed alpha
Helix 25
25
B
202 212Right-handed alpha
Helix 26
26
B
213 221Right-handed 310
Helix 27
27
B
225 245Right-handed alpha
Helix 28
28
B
272 277Right-handed 310
Helix 29
29
B
278 283Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3NQ5. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
284 286parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
285 286parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il