Analysis of interatomic Contacts of Structural Units in PDB entry:
3NQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NQV entry

There is 1 chain in PDB entry 3NQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4HIS 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3NQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 13Right-handed alpha
Helix 2
2
A
25 36Right-handed alpha
Helix 3
3
A
49 51Right-handed 310
Helix 4
4
A
52 63Right-handed alpha
Helix 5
5
A
82 97Right-handed alpha
Helix 6
6
A
106 112Right-handed alpha
Helix 7
7
A
115 132Right-handed alpha
Helix 8
8
A
141 146Right-handed alpha
Helix 9
9
A
147 161Right-handed alpha
Helix 10
10
A
179 194Right-handed alpha
Helix 11
11
A
209 225Right-handed alpha
Helix 12
12
A
239 250Right-handed alpha
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There are 2 sheets in PDB entry 3NQV. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
165 167parallel
Strand 3
A
135 139parallel
Strand 4
A
100 104parallel
Strand 5
A
69 74parallel
Strand 6
A
45 47parallel
Strand 7
A
15 18parallel
Strand 8
A
236 238parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
41 42anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il