Analysis of interatomic Contacts of Structural Units in PDB entry:
3NQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NQY entry

There are 2 chains in PDB entry 3NQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 205ALA 511
A
 ALA 25HIS 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3NQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
276 297Right-handed alpha
Helix 2
2
B
339 354Right-handed alpha
Helix 3
3
B
361 385Right-handed alpha
Helix 4
4
B
392 396Right-handed 310
Helix 5
5
B
407 412Right-handed 310
Helix 6
6
B
417 421Right-handed 310
Helix 7
7
B
426 431Right-handed alpha
Helix 8
8
B
431 443Right-handed alpha
Helix 9
9
B
448 463Right-handed alpha
Helix 10
10
B
469 484Right-handed alpha
Helix 11
11
B
487 498Right-handed alpha
Helix 12
12
A
33 41Right-handed alpha
Helix 13
13
A
51 57Right-handed alpha
Helix 14
14
A
114 119Right-handed alpha
Helix 15
15
A
127 136Right-handed alpha
Helix 16
16
A
138 143Right-handed alpha
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There are 8 sheets in PDB entry 3NQY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
228 229anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
219 221anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
236 238anti-parallel
Strand 3
B
260 262anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 248first strand
Strand 2
B
305 311parallel
Strand 3
B
325 328parallel
Strand 4
B
318 320anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 391first strand
Strand 2
B
403 404anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
103 113anti-parallel
Strand 3
A
95 100anti-parallel
Strand 4
A
76 85anti-parallel
Strand 5
A
62 71anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
103 113anti-parallel
Strand 3
A
95 100anti-parallel
Strand 4
A
76 85anti-parallel
Strand 5
A
88 89anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 160first strand
Strand 2
A
166 175anti-parallel
Strand 3
A
184 189anti-parallel
Strand 4
A
195 200anti-parallel
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