Analysis of interatomic Contacts of Structural Units in PDB entry:
3NSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NSJ entry

There is 1 chain in PDB entry 3NSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 21GLY 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3NSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 32Right-handed alpha
Helix 2
2
A
39 43Right-handed 310
Helix 3
3
A
112 122Right-handed alpha
Helix 4
4
A
151 164Right-handed alpha
Helix 5
5
A
189 198Right-handed alpha
Helix 6
6
A
207 219Right-handed alpha
Helix 7
7
A
240 246Right-handed alpha
Helix 8
8
A
249 265Right-handed alpha
Helix 9
9
A
272 285Right-handed alpha
Helix 10
10
A
290 295Right-handed alpha
Helix 11
11
A
306 310Right-handed 310
Helix 12
12
A
320 331Right-handed alpha
Helix 13
13
A
346 349Right-handed 310
Helix 14
14
A
354 370Right-handed alpha
Helix 15
15
A
403 407Right-handed 310
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There are 8 sheets in PDB entry 3NSJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
84 87anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 344first strand
Strand 2
A
221 239anti-parallel
Strand 3
A
166 182anti-parallel
Strand 4
A
106 110anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
221 239anti-parallel
Strand 3
A
166 182anti-parallel
Strand 4
A
91 96anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 303first strand
Strand 2
A
221 239anti-parallel
Strand 3
A
166 182anti-parallel
Strand 4
A
91 96anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
394 396anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 470first strand
Strand 2
A
413 424anti-parallel
Strand 3
A
515 524anti-parallel
Strand 4
A
503 510anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 448first strand
Strand 2
A
436 442anti-parallel
Strand 3
A
477 483anti-parallel
Strand 4
A
491 498anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 529first strand
Strand 2
A
535 536anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il