Analysis of interatomic Contacts of Structural Units in PDB entry:
3NTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NTJ entry

There are 4 chains in PDB entry 3NTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8LEU 414
B
 LYS 8LEU 414
C
 LYS 8LEU 414
D
 LYS 8LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 3NTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 21Right-handed alpha
Helix 2
2
A
52 57Right-handed alpha
Helix 3
3
A
64 78Right-handed alpha
Helix 4
4
A
88 102Right-handed alpha
Helix 5
5
A
111 130Right-handed alpha
Helix 6
6
A
181 190Right-handed alpha
Helix 7
7
A
214 227Right-handed alpha
Helix 8
8
A
246 252Right-handed 310
Helix 9
9
A
261 266Right-handed 310
Helix 10
10
A
277 282Right-handed alpha
Helix 11
11
A
296 313Right-handed alpha
Helix 12
12
A
314 334Right-handed alpha
Helix 13
13
A
360 372Right-handed alpha
Helix 14
14
A
392 413Right-handed alpha
Helix 15
15
B
9 21Right-handed alpha
Helix 16
16
B
52 57Right-handed alpha
Helix 17
17
B
64 76Right-handed alpha
Helix 18
18
B
88 102Right-handed alpha
Helix 19
19
B
111 130Right-handed alpha
Helix 20
20
B
181 190Right-handed alpha
Helix 21
21
B
214 227Right-handed alpha
Helix 22
22
B
246 252Right-handed 310
Helix 23
23
B
261 266Right-handed 310
Helix 24
24
B
277 282Right-handed alpha
Helix 25
25
B
296 313Right-handed alpha
Helix 26
26
B
314 334Right-handed alpha
Helix 27
27
B
360 372Right-handed alpha
Helix 28
28
B
392 412Right-handed alpha
Helix 29
29
C
9 21Right-handed alpha
Helix 30
30
C
52 57Right-handed alpha
Helix 31
31
C
64 76Right-handed alpha
Helix 32
32
C
88 102Right-handed alpha
Helix 33
33
C
111 130Right-handed alpha
Helix 34
34
C
134 138Right-handed 310
Helix 35
35
C
181 190Right-handed alpha
Helix 36
36
C
214 227Right-handed alpha
Helix 37
37
C
246 252Right-handed 310
Helix 38
38
C
261 266Right-handed 310
Helix 39
39
C
277 282Right-handed alpha
Helix 40
40
C
296 313Right-handed alpha
Helix 41
41
C
314 334Right-handed alpha
Helix 42
42
C
360 372Right-handed alpha
Helix 43
43
C
392 412Right-handed alpha
Helix 44
44
D
9 21Right-handed alpha
Helix 45
45
D
52 57Right-handed alpha
Helix 46
46
D
64 76Right-handed alpha
Helix 47
47
D
88 102Right-handed alpha
Helix 48
48
D
111 130Right-handed alpha
Helix 49
49
D
181 190Right-handed alpha
Helix 50
50
D
214 227Right-handed alpha
Helix 51
51
D
246 252Right-handed 310
Helix 52
52
D
261 266Right-handed 310
Helix 53
53
D
277 282Right-handed alpha
Helix 54
54
D
296 313Right-handed alpha
Helix 55
55
D
314 334Right-handed alpha
Helix 56
56
D
360 372Right-handed alpha
Helix 57
57
D
392 413Right-handed alpha
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There are 12 sheets in PDB entry 3NTJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
47 50parallel
Strand 3
A
39 42anti-parallel
Strand 4
A
31 36anti-parallel
Strand 5
B
86 87parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
B
31 36parallel
Strand 3
B
39 42anti-parallel
Strand 4
B
47 50anti-parallel
Strand 5
B
373 374parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
272 276anti-parallel
Strand 3
A
257 260anti-parallel
Strand 4
A
229 233parallel
Strand 5
A
194 199parallel
Strand 6
A
139 143parallel
Strand 7
A
174 177parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 346first strand
Strand 2
A
349 354anti-parallel
Strand 3
A
382 385anti-parallel
Strand 4
A
377 378anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
272 276anti-parallel
Strand 3
B
257 260anti-parallel
Strand 4
B
229 233parallel
Strand 5
B
194 199parallel
Strand 6
B
139 143parallel
Strand 7
B
174 177parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 346first strand
Strand 2
B
349 354anti-parallel
Strand 3
B
382 385anti-parallel
Strand 4
B
377 378anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 374first strand
Strand 2
C
47 50parallel
Strand 3
C
39 42anti-parallel
Strand 4
C
31 36anti-parallel
Strand 5
D
86 87parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 87first strand
Strand 2
D
31 36parallel
Strand 3
D
39 42anti-parallel
Strand 4
D
47 50anti-parallel
Strand 5
D
373 374parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 109first strand
Strand 2
C
272 276anti-parallel
Strand 3
C
257 260anti-parallel
Strand 4
C
229 233parallel
Strand 5
C
194 199parallel
Strand 6
C
139 143parallel
Strand 7
C
174 177parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
340 346first strand
Strand 2
C
349 354anti-parallel
Strand 3
C
382 385anti-parallel
Strand 4
C
377 378anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 109first strand
Strand 2
D
272 276anti-parallel
Strand 3
D
257 260anti-parallel
Strand 4
D
229 233parallel
Strand 5
D
194 199parallel
Strand 6
D
139 143parallel
Strand 7
D
174 177parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
340 346first strand
Strand 2
D
349 354anti-parallel
Strand 3
D
382 385anti-parallel
Strand 4
D
377 378anti-parallel
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