Analysis of interatomic Contacts of Structural Units in PDB entry:
3NUH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NUH entry

There are 2 chains in PDB entry 3NUH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ASN 524
B
 GLY 402ALA 784
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 3NUH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 34Right-handed alpha
Helix 2
2
A
42 56Right-handed alpha
Helix 3
3
A
66 77Right-handed alpha
Helix 4
4
A
81 92Right-handed alpha
Helix 5
5
A
130 135Right-handed alpha
Helix 6
6
A
164 169Right-handed alpha
Helix 7
7
A
186 200Right-handed alpha
Helix 8
8
A
204 209Right-handed alpha
Helix 9
9
A
226 236Right-handed alpha
Helix 10
10
A
269 284Right-handed alpha
Helix 11
11
A
312 324Right-handed alpha
Helix 12
12
A
346 389Right-handed alpha
Helix 13
13
A
389 400Right-handed alpha
Helix 14
14
A
402 413Right-handed alpha
Helix 15
15
A
420 425Right-handed alpha
Helix 16
16
A
451 461Right-handed alpha
Helix 17
17
A
463 466Right-handed 310
Helix 18
18
A
467 494Right-handed alpha
Helix 19
19
A
494 513Right-handed alpha
Helix 20
20
B
425 436Right-handed alpha
Helix 21
21
B
464 475Right-handed alpha
Helix 22
22
B
504 518Right-handed alpha
Helix 23
23
B
518 524Right-handed alpha
Helix 24
24
B
548 562Right-handed alpha
Helix 25
25
B
577 597Right-handed alpha
Helix 26
26
B
602 612Right-handed alpha
Helix 27
27
B
616 622Right-handed alpha
Helix 28
28
B
622 641Right-handed alpha
Helix 29
29
B
678 684Right-handed alpha
Helix 30
30
B
684 700Right-handed alpha
Helix 31
31
B
718 731Right-handed alpha
Helix 32
32
B
741 745Right-handed 310
Helix 33
33
B
746 755Right-handed alpha
Helix 34
34
B
766 781Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3NUH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
124 127anti-parallel
Strand 3
A
103 106anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
154 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 333first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
222 223anti-parallel
Strand 4
A
520 521parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
257 263anti-parallel
Strand 3
A
303 307anti-parallel
Strand 4
A
289 294anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
342 344anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 446first strand
Strand 2
B
419 424parallel
Strand 3
B
492 495parallel
Strand 4
B
527 530parallel
Strand 5
B
762 764anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 546first strand
Strand 2
B
535 539anti-parallel
Strand 3
B
735 738anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
574 576first strand
Strand 2
B
564 568anti-parallel
Strand 3
B
705 709anti-parallel
Strand 4
B
713 716anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
646 653first strand
Strand 2
B
660 667anti-parallel
Strand 3
B
672 676anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il