Analysis of interatomic Contacts of Structural Units in PDB entry:
3NUI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NUI entry

There are 2 chains in PDB entry 3NUI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 30ALA 454
B
 THR 30ALA 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3NUI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 58Right-handed alpha
Helix 2
2
A
65 79Right-handed alpha
Helix 3
3
A
91 104Right-handed alpha
Helix 4
4
A
116 135Right-handed alpha
Helix 5
5
A
154 161Right-handed alpha
Helix 6
6
A
163 170Right-handed 310
Helix 7
7
A
183 188Right-handed alpha
Helix 8
8
A
193 213Right-handed alpha
Helix 9
9
A
237 249Right-handed alpha
Helix 10
10
A
269 274Right-handed alpha
Helix 11
11
A
284 289Right-handed 310
Helix 12
12
A
300 315Right-handed alpha
Helix 13
13
A
326 343Right-handed alpha
Helix 14
14
A
344 364Right-handed alpha
Helix 15
15
A
394 397Right-handed 310
Helix 16
16
A
398 410Right-handed alpha
Helix 17
17
A
430 454Right-handed alpha
Helix 18
18
B
65 78Right-handed alpha
Helix 19
19
B
90 104Right-handed alpha
Helix 20
20
B
116 135Right-handed alpha
Helix 21
21
B
163 168Right-handed 310
Helix 22
22
B
183 188Right-handed alpha
Helix 23
23
B
193 213Right-handed alpha
Helix 24
24
B
237 249Right-handed alpha
Helix 25
25
B
269 274Right-handed alpha
Helix 26
26
B
285 289Right-handed 310
Helix 27
27
B
300 314Right-handed alpha
Helix 28
28
B
326 343Right-handed alpha
Helix 29
29
B
344 364Right-handed alpha
Helix 30
30
B
394 397Right-handed 310
Helix 31
31
B
398 410Right-handed alpha
Helix 32
32
B
430 455Right-handed alpha
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There are 6 sheets in PDB entry 3NUI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
48 51anti-parallel
Strand 4
A
412 413parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
B
31 37parallel
Strand 3
B
40 43anti-parallel
Strand 4
B
48 51anti-parallel
Strand 5
B
412 413parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
295 299anti-parallel
Strand 3
A
280 283anti-parallel
Strand 4
A
253 256parallel
Strand 5
A
217 222parallel
Strand 6
A
142 146parallel
Strand 7
A
176 179parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 375first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
420 423anti-parallel
Strand 4
A
415 417anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 114first strand
Strand 2
B
295 299anti-parallel
Strand 3
B
280 283anti-parallel
Strand 4
B
253 256parallel
Strand 5
B
217 222parallel
Strand 6
B
142 145parallel
Strand 7
B
176 178parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 375first strand
Strand 2
B
378 383anti-parallel
Strand 3
B
420 423anti-parallel
Strand 4
B
415 417anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il