Analysis of interatomic Contacts of Structural Units in PDB entry:
3NV0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NV0 entry

There are 2 chains in PDB entry 3NV0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 201LEU 396
B
 SER 2ASP 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3NV0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
209 228Right-handed alpha
Helix 2
2
A
231 236Right-handed alpha
Helix 3
3
A
237 243Right-handed 310
Helix 4
4
A
268 278Right-handed alpha
Helix 5
5
A
281 285Right-handed 310
Helix 6
6
A
299 310Right-handed alpha
Helix 7
7
A
317 320Right-handed 310
Helix 8
8
A
343 348Right-handed alpha
Helix 9
9
A
386 396Right-handed alpha
Helix 10
10
B
5 34Right-handed alpha
Helix 11
11
B
35 40Right-handed 310
Helix 12
12
B
57 68Right-handed alpha
Helix 13
13
B
88 92Right-handed 310
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There are 3 sheets in PDB entry 3NV0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
249 255anti-parallel
Strand 3
A
373 383parallel
Strand 4
A
357 367anti-parallel
Strand 5
A
332 342anti-parallel
Strand 6
A
313 315anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
249 255anti-parallel
Strand 3
A
373 383parallel
Strand 4
A
357 367anti-parallel
Strand 5
A
332 342anti-parallel
Strand 6
A
321 327anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
42 50anti-parallel
Strand 3
B
125 135parallel
Strand 4
B
111 122anti-parallel
Strand 5
B
95 105anti-parallel
Strand 6
B
71 82anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il