Analysis of interatomic Contacts of Structural Units in PDB entry:
3NV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NV5 entry

There is 1 chain in PDB entry 3NV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11PRO 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3NV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 24Right-handed 310
Helix 2
2
A
34 37Right-handed 310
Helix 3
3
A
38 45Right-handed alpha
Helix 4
4
A
58 62Right-handed 310
Helix 5
5
A
68 77Right-handed alpha
Helix 6
6
A
108 121Right-handed alpha
Helix 7
7
A
121 127Right-handed alpha
Helix 8
8
A
128 142Right-handed alpha
Helix 9
9
A
143 146Right-handed 310
Helix 10
10
A
151 155Right-handed alpha
Helix 11
11
A
158 168Right-handed alpha
Helix 12
12
A
171 173Right-handed 310
Helix 13
13
A
174 187Right-handed alpha
Helix 14
14
A
196 219Right-handed alpha
Helix 15
15
A
225 232Right-handed alpha
Helix 16
16
A
241 256Right-handed alpha
Helix 17
17
A
257 273Right-handed alpha
Helix 18
18
A
274 284Right-handed alpha
Helix 19
19
A
284 291Right-handed alpha
Helix 20
20
A
291 299Right-handed alpha
Helix 21
21
A
329 334Right-handed alpha
Helix 22
22
A
359 363Right-handed 310
Helix 23
23
A
366 385Right-handed alpha
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There are 5 sheets in PDB entry 3NV5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
324 328parallel
Strand 4
A
303 308anti-parallel
Strand 5
A
82 83anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
410 412anti-parallel
Strand 3
A
389 390anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
238 239anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
317 319anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 399first strand
Strand 2
A
405 407anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il