Analysis of interatomic Contacts of Structural Units in PDB entry:
3NV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NV9 entry

There are 2 chains in PDB entry 3NV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 486
B
 MET 1GLY 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 3NV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
20 44Right-handed alpha
Helix 3
3
A
57 59Right-handed 310
Helix 4
4
A
60 65Right-handed alpha
Helix 5
5
A
68 79Right-handed alpha
Helix 6
6
A
82 87Right-handed alpha
Helix 7
7
A
88 90Right-handed 310
Helix 8
8
A
102 106Right-handed 310
Helix 9
9
A
109 112Right-handed 310
Helix 10
10
A
113 129Right-handed alpha
Helix 11
11
A
147 159Right-handed alpha
Helix 12
12
A
160 162Right-handed 310
Helix 13
13
A
173 186Right-handed alpha
Helix 14
14
A
195 214Right-handed alpha
Helix 15
15
A
216 220Right-handed 310
Helix 16
16
A
228 241Right-handed alpha
Helix 17
17
A
244 246Right-handed 310
Helix 18
18
A
261 267Right-handed alpha
Helix 19
19
A
270 280Right-handed alpha
Helix 20
20
A
287 293Right-handed alpha
Helix 21
21
A
310 316Right-handed alpha
Helix 22
22
A
334 341Right-handed alpha
Helix 23
23
A
358 361Right-handed 310
Helix 24
24
A
362 373Right-handed alpha
Helix 25
25
A
379 397Right-handed alpha
Helix 26
26
A
412 429Right-handed alpha
Helix 27
27
A
437 462Right-handed alpha
Helix 28
28
A
469 486Right-handed alpha
Helix 29
29
B
11 15Right-handed 310
Helix 30
30
B
20 43Right-handed alpha
Helix 31
31
B
57 59Right-handed 310
Helix 32
32
B
60 65Right-handed alpha
Helix 33
33
B
68 79Right-handed alpha
Helix 34
34
B
82 87Right-handed alpha
Helix 35
35
B
88 90Right-handed 310
Helix 36
36
B
102 106Right-handed 310
Helix 37
37
B
109 112Right-handed 310
Helix 38
38
B
113 129Right-handed alpha
Helix 39
39
B
147 159Right-handed alpha
Helix 40
40
B
160 162Right-handed 310
Helix 41
41
B
173 186Right-handed alpha
Helix 42
42
B
195 213Right-handed alpha
Helix 43
43
B
216 220Right-handed 310
Helix 44
44
B
228 241Right-handed alpha
Helix 45
45
B
244 246Right-handed 310
Helix 46
46
B
261 266Right-handed alpha
Helix 47
47
B
267 269Right-handed 310
Helix 48
48
B
270 280Right-handed alpha
Helix 49
49
B
287 293Right-handed alpha
Helix 50
50
B
310 316Right-handed alpha
Helix 51
51
B
334 341Right-handed alpha
Helix 52
52
B
358 361Right-handed 310
Helix 53
53
B
362 373Right-handed alpha
Helix 54
54
B
379 398Right-handed alpha
Helix 55
55
B
412 428Right-handed alpha
Helix 56
56
B
437 462Right-handed alpha
Helix 57
57
B
469 486Right-handed alpha
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There are 5 sheets in PDB entry 3NV9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
B
47 51anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 136first strand
Strand 2
A
92 97parallel
Strand 3
A
164 167parallel
Strand 4
A
190 192parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
248 252anti-parallel
Strand 3
A
222 225parallel
Strand 4
A
297 300parallel
Strand 5
A
322 325parallel
Strand 6
A
345 348parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 136first strand
Strand 2
B
92 97parallel
Strand 3
B
164 167parallel
Strand 4
B
190 192parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
248 252anti-parallel
Strand 3
B
222 225parallel
Strand 4
B
297 300parallel
Strand 5
B
322 325parallel
Strand 6
B
345 347parallel
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