Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVD entry

There are 2 chains in PDB entry 3NVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 26LEU 642
B
 ALA 26GLY 49
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 3NVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
43 51Right-handed alpha
Helix 3
3
A
74 85Right-handed alpha
Helix 4
4
A
92 96Right-handed 310
Helix 5
5
A
98 113Right-handed alpha
Helix 6
6
A
140 148Right-handed alpha
Helix 7
7
A
149 168Right-handed alpha
Helix 8
8
A
188 192Right-handed 310
Helix 9
9
A
196 213Right-handed alpha
Helix 10
10
A
243 250Right-handed alpha
Helix 11
11
A
252 261Right-handed alpha
Helix 12
12
A
293 296Right-handed 310
Helix 13
13
A
297 302Right-handed alpha
Helix 14
14
A
322 327Right-handed alpha
Helix 15
15
A
330 342Right-handed alpha
Helix 16
16
A
354 357Right-handed 310
Helix 17
17
A
358 374Right-handed alpha
Helix 18
18
A
378 396Right-handed alpha
Helix 19
19
A
406 418Right-handed alpha
Helix 20
20
A
420 435Right-handed alpha
Helix 21
21
A
442 444Right-handed 310
Helix 22
22
A
461 478Right-handed alpha
Helix 23
23
A
497 507Right-handed alpha
Helix 24
24
A
537 553Right-handed alpha
Helix 25
25
A
564 571Right-handed 310
Helix 26
26
A
594 604Right-handed alpha
Helix 27
27
B
26 40Right-handed alpha
Helix 28
28
B
43 51Right-handed alpha
Helix 29
29
B
74 85Right-handed alpha
Helix 30
30
B
92 96Right-handed 310
Helix 31
31
B
98 113Right-handed alpha
Helix 32
32
B
140 148Right-handed alpha
Helix 33
33
B
149 168Right-handed alpha
Helix 34
34
B
188 192Right-handed 310
Helix 35
35
B
196 214Right-handed alpha
Helix 36
36
B
243 250Right-handed alpha
Helix 37
37
B
252 261Right-handed alpha
Helix 38
38
B
293 296Right-handed 310
Helix 39
39
B
297 302Right-handed alpha
Helix 40
40
B
322 327Right-handed alpha
Helix 41
41
B
330 342Right-handed alpha
Helix 42
42
B
354 357Right-handed 310
Helix 43
43
B
358 375Right-handed alpha
Helix 44
44
B
378 396Right-handed alpha
Helix 45
45
B
406 418Right-handed alpha
Helix 46
46
B
420 435Right-handed alpha
Helix 47
47
B
442 444Right-handed 310
Helix 48
48
B
461 478Right-handed alpha
Helix 49
49
B
497 507Right-handed alpha
Helix 50
50
B
537 553Right-handed alpha
Helix 51
51
B
564 572Right-handed 310
Helix 52
52
B
594 604Right-handed alpha
Back to top of page

There are 17 sheets in PDB entry 3NVD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
346 347parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
119 121parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
217 223parallel
Strand 3
A
265 268parallel
Strand 4
A
314 316parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
289 291anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
576 579anti-parallel
Strand 3
A
557 561parallel
Strand 4
A
509 514parallel
Strand 5
A
454 459parallel
Strand 6
A
485 490parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
527 528anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 587first strand
Strand 2
A
590 591anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 618first strand
Strand 2
A
626 628anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
346 347parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
119 122parallel
Strand 3
B
171 172parallel
Strand 4
B
217 223parallel
Strand 5
B
265 268parallel
Strand 6
B
314 316parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 282first strand
Strand 2
B
289 291anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 440first strand
Strand 2
B
576 579anti-parallel
Strand 3
B
557 561parallel
Strand 4
B
509 514parallel
Strand 5
B
453 459parallel
Strand 6
B
484 490parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
523 524first strand
Strand 2
B
527 528anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
586 587first strand
Strand 2
B
590 591anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
617 618first strand
Strand 2
B
626 628anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il