Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVI entry

There are 6 chains in PDB entry 3NVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 127TYR 373
B
 LYS 4LYS 124
C
 GLN 127TYR 373
D
 LYS 4LYS 124
E
 C 2 C 25
F
 C 2 C 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3NVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
130 164Right-handed alpha
Helix 2
2
A
166 171Right-handed alpha
Helix 3
3
A
173 184Right-handed alpha
Helix 4
4
A
186 190Right-handed 310
Helix 5
5
A
191 197Right-handed alpha
Helix 6
6
A
201 207Right-handed alpha
Helix 7
7
A
208 214Right-handed alpha
Helix 8
8
A
221 257Right-handed alpha
Helix 9
9
A
257 265Right-handed alpha
Helix 10
10
A
265 277Right-handed alpha
Helix 11
11
A
278 284Right-handed alpha
Helix 12
12
A
286 293Right-handed alpha
Helix 13
13
A
295 305Right-handed alpha
Helix 14
14
A
313 317Right-handed 310
Helix 15
15
A
318 323Right-handed alpha
Helix 16
16
A
325 327Right-handed 310
Helix 17
17
A
328 350Right-handed alpha
Helix 18
18
A
354 372Right-handed alpha
Helix 19
19
B
13 30Right-handed alpha
Helix 20
20
B
36 46Right-handed alpha
Helix 21
21
B
66 74Right-handed alpha
Helix 22
22
B
83 91Right-handed alpha
Helix 23
23
B
105 107Right-handed 310
Helix 24
24
B
108 124Right-handed alpha
Helix 25
25
C
130 161Right-handed alpha
Helix 26
26
C
162 163Right-handed 310
Helix 27
27
C
164 165Right-handed 310
Helix 28
28
C
166 171Right-handed alpha
Helix 29
29
C
173 184Right-handed alpha
Helix 30
30
C
186 190Right-handed 310
Helix 31
31
C
191 198Right-handed alpha
Helix 32
32
C
201 214Right-handed alpha
Helix 33
33
C
221 257Right-handed alpha
Helix 34
34
C
257 265Right-handed alpha
Helix 35
35
C
265 277Right-handed alpha
Helix 36
36
C
278 284Right-handed alpha
Helix 37
37
C
286 293Right-handed alpha
Helix 38
38
C
295 306Right-handed alpha
Helix 39
39
C
313 317Right-handed 310
Helix 40
40
C
318 323Right-handed alpha
Helix 41
41
C
325 327Right-handed 310
Helix 42
42
C
328 350Right-handed alpha
Helix 43
43
C
354 372Right-handed alpha
Helix 44
44
D
13 31Right-handed alpha
Helix 45
45
D
36 46Right-handed alpha
Helix 46
46
D
60 65Right-handed 310
Helix 47
47
D
66 74Right-handed alpha
Helix 48
48
D
83 91Right-handed alpha
Helix 49
49
D
105 107Right-handed 310
Helix 50
50
D
108 124Right-handed alpha
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There are 2 sheets in PDB entry 3NVI. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
99 104anti-parallel
Strand 3
B
51 55anti-parallel
Strand 4
B
78 81parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
99 104anti-parallel
Strand 3
D
51 55anti-parallel
Strand 4
D
78 81parallel
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