Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVJ entry

There is 1 chain in PDB entry 3NVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 54LEU 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3NVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 75Right-handed alpha
Helix 2
2
A
102 106Right-handed 310
Helix 3
3
A
112 116Right-handed 310
Helix 4
4
A
117 120Right-handed 310
Helix 5
5
A
121 126Right-handed alpha
Helix 6
6
A
129 133Right-handed 310
Helix 7
7
A
140 144Right-handed 310
Helix 8
8
A
145 149Right-handed 310
Helix 9
9
A
192 206Right-handed alpha
Helix 10
10
A
215 241Right-handed alpha
Helix 11
11
A
253 261Right-handed alpha
Helix 12
12
A
264 286Right-handed alpha
Helix 13
13
A
287 289Right-handed 310
Helix 14
14
A
301 313Right-handed alpha
Helix 15
15
A
316 320Right-handed 310
Helix 16
16
A
329 342Right-handed alpha
Helix 17
17
A
342 347Right-handed alpha
Helix 18
18
A
348 350Right-handed 310
Helix 19
19
A
352 378Right-handed alpha
Helix 20
20
A
380 390Right-handed alpha
Helix 21
21
A
392 422Right-handed alpha
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There are 2 sheets in PDB entry 3NVJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
176 180anti-parallel
Strand 3
A
134 135anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
250 251anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il