Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVK entry

There are 10 chains in PDB entry 3NVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8LEU 370
F
 PHE 8LEU 370
E
 LYS 4LYS 124
H
 LYS 4LYS 124
I
 MET 1PRO 227
J
 MET 1PRO 227
K
 A 1 A 24
G
 G 2 U 4
L
 A 1 A 24
S
 G 2 U 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3NVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 44Right-handed alpha
Helix 2
2
A
48 62Right-handed alpha
Helix 3
3
A
70 79Right-handed alpha
Helix 4
4
A
90 99Right-handed alpha
Helix 5
5
A
100 105Right-handed alpha
Helix 6
6
A
107 124Right-handed alpha
Helix 7
7
A
130 164Right-handed alpha
Helix 8
8
A
165 170Right-handed 310
Helix 9
9
A
173 184Right-handed alpha
Helix 10
10
A
186 190Right-handed 310
Helix 11
11
A
191 197Right-handed alpha
Helix 12
12
A
203 208Right-handed alpha
Helix 13
13
A
208 214Right-handed alpha
Helix 14
14
A
223 253Right-handed alpha
Helix 15
15
A
257 265Right-handed alpha
Helix 16
16
A
265 275Right-handed alpha
Helix 17
17
A
279 284Right-handed alpha
Helix 18
18
A
287 292Right-handed alpha
Helix 19
19
A
294 299Right-handed alpha
Helix 20
20
A
314 317Right-handed 310
Helix 21
21
A
318 323Right-handed alpha
Helix 22
22
A
330 350Right-handed alpha
Helix 23
23
A
354 364Right-handed alpha
Helix 24
24
F
34 45Right-handed alpha
Helix 25
25
F
48 61Right-handed alpha
Helix 26
26
F
70 79Right-handed alpha
Helix 27
27
F
90 99Right-handed alpha
Helix 28
28
F
100 105Right-handed alpha
Helix 29
29
F
107 124Right-handed alpha
Helix 30
30
F
130 164Right-handed alpha
Helix 31
31
F
165 170Right-handed 310
Helix 32
32
F
173 184Right-handed alpha
Helix 33
33
F
191 197Right-handed alpha
Helix 34
34
F
203 208Right-handed alpha
Helix 35
35
F
208 214Right-handed alpha
Helix 36
36
F
221 253Right-handed alpha
Helix 37
37
F
257 265Right-handed alpha
Helix 38
38
F
265 275Right-handed alpha
Helix 39
39
F
278 284Right-handed alpha
Helix 40
40
F
287 292Right-handed alpha
Helix 41
41
F
313 317Right-handed 310
Helix 42
42
F
318 324Right-handed alpha
Helix 43
43
F
330 350Right-handed alpha
Helix 44
44
F
354 364Right-handed alpha
Helix 45
45
E
13 26Right-handed alpha
Helix 46
46
E
37 46Right-handed alpha
Helix 47
47
E
66 75Right-handed alpha
Helix 48
48
E
83 90Right-handed alpha
Helix 49
49
E
113 123Right-handed alpha
Helix 50
50
H
15 22Right-handed alpha
Helix 51
51
H
37 46Right-handed alpha
Helix 52
52
H
66 75Right-handed alpha
Helix 53
53
H
83 90Right-handed alpha
Helix 54
54
H
112 123Right-handed alpha
Helix 55
55
I
56 64Right-handed alpha
Helix 56
56
I
90 96Right-handed alpha
Helix 57
57
I
107 115Right-handed alpha
Helix 58
58
I
116 120Right-handed 310
Helix 59
59
I
134 138Right-handed 310
Helix 60
60
I
155 167Right-handed alpha
Helix 61
61
I
188 202Right-handed alpha
Helix 62
62
J
56 64Right-handed alpha
Helix 63
63
J
85 96Right-handed alpha
Helix 64
64
J
107 115Right-handed alpha
Helix 65
65
J
116 121Right-handed alpha
Helix 66
66
J
134 138Right-handed 310
Helix 67
67
J
155 167Right-handed alpha
Helix 68
68
J
188 202Right-handed alpha
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There are 10 sheets in PDB entry 3NVK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
28 30anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
85 86parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 11first strand
Strand 2
F
15 18anti-parallel
Strand 3
F
28 30anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
66 68first strand
Strand 2
F
84 86parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 81first strand
Strand 2
E
52 55parallel
Strand 3
E
99 101anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
78 81first strand
Strand 2
H
51 55parallel
Strand 3
H
99 102anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 6first strand
Strand 2
I
13 16anti-parallel
Strand 3
I
22 27anti-parallel
Strand 4
I
47 51anti-parallel
Strand 5
I
40 42anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
124 128first strand
Strand 2
I
100 105parallel
Strand 3
I
76 80parallel
Strand 4
I
146 149parallel
Strand 5
I
173 178parallel
Strand 6
I
220 225anti-parallel
Strand 7
I
205 211anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 6first strand
Strand 2
J
13 16anti-parallel
Strand 3
J
22 27anti-parallel
Strand 4
J
47 50anti-parallel
Strand 5
J
40 42anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
124 128first strand
Strand 2
J
100 105parallel
Strand 3
J
76 80parallel
Strand 4
J
146 149parallel
Strand 5
J
173 178parallel
Strand 6
J
220 225anti-parallel
Strand 7
J
205 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il