Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVL entry

There are 2 chains in PDB entry 3NVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ALA 551
B
 LEU 3ALA 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3NVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 38Right-handed alpha
Helix 2
2
A
40 47Right-handed alpha
Helix 3
3
A
48 51Right-handed 310
Helix 4
4
A
59 64Right-handed 310
Helix 5
5
A
73 84Right-handed alpha
Helix 6
6
A
91 100Right-handed alpha
Helix 7
7
A
101 105Right-handed 310
Helix 8
8
A
106 117Right-handed alpha
Helix 9
9
A
137 150Right-handed alpha
Helix 10
10
A
171 189Right-handed alpha
Helix 11
11
A
212 224Right-handed alpha
Helix 12
12
A
233 245Right-handed alpha
Helix 13
13
A
249 253Right-handed 310
Helix 14
14
A
285 294Right-handed alpha
Helix 15
15
A
336 343Right-handed alpha
Helix 16
16
A
354 361Right-handed alpha
Helix 17
17
A
396 411Right-handed alpha
Helix 18
18
A
421 428Right-handed alpha
Helix 19
19
A
431 455Right-handed alpha
Helix 20
20
A
523 525Right-handed 310
Helix 21
21
A
526 535Right-handed alpha
Helix 22
22
B
33 38Right-handed alpha
Helix 23
23
B
40 48Right-handed alpha
Helix 24
24
B
49 51Right-handed 310
Helix 25
25
B
59 64Right-handed 310
Helix 26
26
B
73 84Right-handed alpha
Helix 27
27
B
91 101Right-handed alpha
Helix 28
28
B
102 105Right-handed 310
Helix 29
29
B
106 117Right-handed alpha
Helix 30
30
B
137 151Right-handed alpha
Helix 31
31
B
171 189Right-handed alpha
Helix 32
32
B
212 224Right-handed alpha
Helix 33
33
B
233 245Right-handed alpha
Helix 34
34
B
249 253Right-handed 310
Helix 35
35
B
285 294Right-handed alpha
Helix 36
36
B
336 344Right-handed alpha
Helix 37
37
B
354 358Right-handed alpha
Helix 38
38
B
388 392Right-handed 310
Helix 39
39
B
396 411Right-handed alpha
Helix 40
40
B
421 428Right-handed alpha
Helix 41
41
B
431 456Right-handed alpha
Helix 42
42
B
523 535Right-handed alpha
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There are 7 sheets in PDB entry 3NVL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
500 505anti-parallel
Strand 3
A
459 463anti-parallel
Strand 4
A
16 21parallel
Strand 5
A
415 420parallel
Strand 6
A
348 353parallel
Strand 7
A
377 382parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
256 258parallel
Strand 3
A
192 200anti-parallel
Strand 4
A
155 162parallel
Strand 5
A
123 128parallel
Strand 6
A
274 277parallel
Strand 7
A
309 312parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 515first strand
Strand 2
A
548 550anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
537 538anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
500 505anti-parallel
Strand 3
B
459 463anti-parallel
Strand 4
B
16 21parallel
Strand 5
B
415 420parallel
Strand 6
B
348 353parallel
Strand 7
B
377 382parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 231first strand
Strand 2
B
256 258parallel
Strand 3
B
192 200anti-parallel
Strand 4
B
155 162parallel
Strand 5
B
123 129parallel
Strand 6
B
274 277parallel
Strand 7
B
309 311parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 515first strand
Strand 2
B
548 550anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il