Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVM entry

There are 2 chains in PDB entry 3NVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8LYS 369
B
 MET 1PRO 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3NVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 43Right-handed alpha
Helix 2
2
A
48 60Right-handed alpha
Helix 3
3
A
72 77Right-handed alpha
Helix 4
4
A
92 97Right-handed alpha
Helix 5
5
A
99 105Right-handed alpha
Helix 6
6
A
107 124Right-handed alpha
Helix 7
7
A
130 163Right-handed alpha
Helix 8
8
A
166 171Right-handed alpha
Helix 9
9
A
173 184Right-handed alpha
Helix 10
10
A
186 190Right-handed 310
Helix 11
11
A
192 197Right-handed alpha
Helix 12
12
A
202 206Right-handed 310
Helix 13
13
A
223 252Right-handed alpha
Helix 14
14
A
252 257Right-handed alpha
Helix 15
15
A
257 265Right-handed alpha
Helix 16
16
A
265 277Right-handed alpha
Helix 17
17
A
278 284Right-handed alpha
Helix 18
18
A
286 292Right-handed alpha
Helix 19
19
A
312 316Right-handed 310
Helix 20
20
A
317 322Right-handed alpha
Helix 21
21
A
324 349Right-handed alpha
Helix 22
22
A
353 366Right-handed alpha
Helix 23
23
A
367 369Right-handed 310
Helix 24
24
B
56 64Right-handed alpha
Helix 25
25
B
85 96Right-handed alpha
Helix 26
26
B
107 112Right-handed alpha
Helix 27
27
B
113 118Right-handed alpha
Helix 28
28
B
134 138Right-handed 310
Helix 29
29
B
155 167Right-handed alpha
Helix 30
30
B
188 201Right-handed alpha
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There are 4 sheets in PDB entry 3NVM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
25 30anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
85 86parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
12 16anti-parallel
Strand 3
B
22 27anti-parallel
Strand 4
B
48 50anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
101 103parallel
Strand 3
B
77 80parallel
Strand 4
B
144 149parallel
Strand 5
B
168 179parallel
Strand 6
B
219 225anti-parallel
Strand 7
B
205 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il