Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVO entry

There are 2 chains in PDB entry 3NVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 264
B
 GLY 1VAL 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3NVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed alpha
Helix 2
2
A
51 61Right-handed alpha
Helix 3
3
A
68 73Right-handed alpha
Helix 4
4
A
126 138Right-handed alpha
Helix 5
5
A
144 175Right-handed alpha
Helix 6
6
A
187 214Right-handed alpha
Helix 7
7
A
222 263Right-handed alpha
Helix 8
8
B
51 61Right-handed alpha
Helix 9
9
B
65 67Right-handed 310
Helix 10
10
B
68 73Right-handed alpha
Helix 11
11
B
128 138Right-handed alpha
Helix 12
12
B
144 180Right-handed alpha
Helix 13
13
B
187 216Right-handed alpha
Helix 14
14
B
222 259Right-handed alpha
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There are 3 sheets in PDB entry 3NVO. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
36 37anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
18 22anti-parallel
Strand 3
A
43 48anti-parallel
Strand 4
A
117 122parallel
Strand 5
A
108 113anti-parallel
Strand 6
A
87 93anti-parallel
Strand 7
A
80 84anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
43 48anti-parallel
Strand 4
B
117 122parallel
Strand 5
B
107 113anti-parallel
Strand 6
B
88 94anti-parallel
Strand 7
B
80 83anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il