Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVS entry

There is 1 chain in PDB entry 3NVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3NVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 35Right-handed alpha
Helix 2
2
A
47 60Right-handed alpha
Helix 3
3
A
95 106Right-handed alpha
Helix 4
4
A
118 124Right-handed 310
Helix 5
5
A
126 136Right-handed alpha
Helix 6
6
A
171 181Right-handed alpha
Helix 7
7
A
182 184Right-handed 310
Helix 8
8
A
198 212Right-handed alpha
Helix 9
9
A
243 258Right-handed alpha
Helix 10
10
A
272 275Right-handed 310
Helix 11
11
A
276 285Right-handed alpha
Helix 12
12
A
315 323Right-handed alpha
Helix 13
13
A
324 326Right-handed 310
Helix 14
14
A
335 341Right-handed 310
Helix 15
15
A
344 356Right-handed alpha
Helix 16
16
A
385 394Right-handed alpha
Helix 17
17
A
395 398Right-handed 310
Helix 18
18
A
407 413Right-handed 310
Helix 19
19
A
416 424Right-handed alpha
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There are 7 sheets in PDB entry 3NVS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
402 405anti-parallel
Strand 3
A
379 380parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
425 426anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
260 264parallel
Strand 3
A
294 298anti-parallel
Strand 4
A
287 290anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
237 239parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
112 116parallel
Strand 3
A
151 154anti-parallel
Strand 4
A
139 142anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
188 192parallel
Strand 3
A
223 226anti-parallel
Strand 4
A
217 219anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
330 333parallel
Strand 3
A
366 370anti-parallel
Strand 4
A
359 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il