Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVX entry

There are 2 chains in PDB entry 3NVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12GLN 394
B
 ILE 13PRO 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3NVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 83Right-handed 310
Helix 2
2
A
201 205Right-handed 310
Helix 3
3
A
260 270Right-handed alpha
Helix 4
4
A
295 305Right-handed alpha
Helix 5
5
A
314 318Right-handed 310
Helix 6
6
B
260 270Right-handed alpha
Helix 7
7
B
295 305Right-handed alpha
Helix 8
8
B
314 318Right-handed 310
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There are 16 sheets in PDB entry 3NVX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
387 390anti-parallel
Strand 3
A
380 384anti-parallel
Strand 4
A
371 376anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
33 37anti-parallel
Strand 3
A
41 46anti-parallel
Strand 4
A
49 54anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
85 88anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
118 121anti-parallel
Strand 3
A
134 135anti-parallel
Strand 4
A
144 145anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 164first strand
Strand 2
A
167 178anti-parallel
Strand 3
A
184 193anti-parallel
Strand 4
A
212 216anti-parallel
Strand 5
A
307 312parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
223 224anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 235first strand
Strand 2
A
240 247anti-parallel
Strand 3
A
252 259anti-parallel
Strand 4
A
321 324anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 334first strand
Strand 2
A
342 348anti-parallel
Strand 3
A
351 356anti-parallel
Strand 4
A
362 366anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
387 390anti-parallel
Strand 3
B
380 384anti-parallel
Strand 4
B
371 376anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 30first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
41 46anti-parallel
Strand 4
B
49 54anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
85 88anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
118 121anti-parallel
Strand 3
B
134 135anti-parallel
Strand 4
B
144 145anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 164first strand
Strand 2
B
167 178anti-parallel
Strand 3
B
184 193anti-parallel
Strand 4
B
212 216anti-parallel
Strand 5
B
307 312parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
223 224anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 235first strand
Strand 2
B
240 247anti-parallel
Strand 3
B
252 259anti-parallel
Strand 4
B
321 324anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 334first strand
Strand 2
B
342 348anti-parallel
Strand 3
B
351 356anti-parallel
Strand 4
B
362 366anti-parallel
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