Analysis of interatomic Contacts of Structural Units in PDB entry:
3NWC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NWC entry

There are 2 chains in PDB entry 3NWC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 487LEU 668
B
 GLU 488ASP 662
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3NWC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
489 506Right-handed alpha
Helix 2
2
A
509 515Right-handed alpha
Helix 3
3
A
526 530Right-handed alpha
Helix 4
4
A
534 536Right-handed 310
Helix 5
5
A
537 546Right-handed alpha
Helix 6
6
A
547 550Right-handed 310
Helix 7
7
A
556 570Right-handed alpha
Helix 8
8
A
603 605Right-handed 310
Helix 9
9
A
606 615Right-handed alpha
Helix 10
10
A
623 630Right-handed 310
Helix 11
11
B
490 506Right-handed alpha
Helix 12
12
B
509 515Right-handed alpha
Helix 13
13
B
526 530Right-handed alpha
Helix 14
14
B
534 536Right-handed 310
Helix 15
15
B
537 546Right-handed alpha
Helix 16
16
B
547 550Right-handed 310
Helix 17
17
B
556 570Right-handed alpha
Helix 18
18
B
603 605Right-handed 310
Helix 19
19
B
606 615Right-handed alpha
Helix 20
20
B
622 627Right-handed alpha
Helix 21
21
B
628 630Right-handed 310
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There are 6 sheets in PDB entry 3NWC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 525first strand
Strand 2
A
552 554anti-parallel
Strand 3
A
577 579parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 601first strand
Strand 2
A
531 532anti-parallel
Strand 3
B
660 661parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 595first strand
Strand 2
A
617 620anti-parallel
Strand 3
A
634 637parallel
Strand 4
A
642 643anti-parallel
Strand 5
A
649 650anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 661first strand
Strand 2
B
531 532parallel
Strand 3
B
600 601anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
522 525first strand
Strand 2
B
552 554anti-parallel
Strand 3
B
577 579parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
594 595first strand
Strand 2
B
617 620anti-parallel
Strand 3
B
634 637parallel
Strand 4
B
642 643anti-parallel
Strand 5
B
649 650anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il