Analysis of interatomic Contacts of Structural Units in PDB entry:
3NWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NWR entry

There are 2 chains in PDB entry 3NWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12ILE 194
A
 ASP 196PHE 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3NWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 38Right-handed alpha
Helix 2
2
A
77 83Right-handed alpha
Helix 3
3
A
101 103Right-handed 310
Helix 4
4
A
106 115Right-handed alpha
Helix 5
5
A
116 121Right-handed 310
Helix 6
6
A
135 140Right-handed alpha
Helix 7
7
A
147 157Right-handed alpha
Helix 8
8
A
175 190Right-handed alpha
Helix 9
9
A
207 227Right-handed alpha
Helix 10
10
A
239 253Right-handed alpha
Helix 11
11
A
262 266Right-handed alpha
Helix 12
12
A
266 277Right-handed alpha
Helix 13
13
A
300 310Right-handed alpha
Helix 14
14
A
328 341Right-handed alpha
Helix 15
15
A
360 362Right-handed 310
Helix 16
16
A
363 372Right-handed alpha
Helix 17
17
A
381 386Right-handed alpha
Helix 18
18
A
390 408Right-handed alpha
Helix 19
19
A
410 415Right-handed alpha
Helix 20
20
A
418 428Right-handed alpha
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There are 2 sheets in PDB entry 3NWR. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 70first strand
Strand 2
A
89 99anti-parallel
Strand 3
A
14 23anti-parallel
Strand 4
A
126 133anti-parallel
Strand 5
A
297 299parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
193 195parallel
Strand 3
A
231 235parallel
Strand 4
A
257 261parallel
Strand 5
A
280 284parallel
Strand 6
A
315 319parallel
Strand 7
A
352 355parallel
Strand 8
A
377 379parallel
Strand 9
A
163 167parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il