Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYB entry

There are 2 chains in PDB entry 3NYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 159TYR 481
B
 GLN 122LEU 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3NYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
161 165Right-handed 310
Helix 2
2
A
174 190Right-handed alpha
Helix 3
3
A
193 213Right-handed alpha
Helix 4
4
A
246 248Right-handed 310
Helix 5
5
A
249 264Right-handed alpha
Helix 6
6
A
302 314Right-handed alpha
Helix 7
7
A
317 332Right-handed alpha
Helix 8
8
A
336 340Right-handed 310
Helix 9
9
A
343 357Right-handed alpha
Helix 10
10
A
358 363Right-handed alpha
Helix 11
11
A
367 370Right-handed 310
Helix 12
12
A
371 386Right-handed alpha
Helix 13
13
A
407 413Right-handed 310
Helix 14
14
A
439 463Right-handed alpha
Helix 15
15
A
465 470Right-handed alpha
Helix 16
16
B
132 140Right-handed 310
Helix 17
17
B
173 177Right-handed 310
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There are 3 sheets in PDB entry 3NYB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
237 241anti-parallel
Strand 3
A
290 295parallel
Strand 4
A
279 285anti-parallel
Strand 5
A
271 274anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 396first strand
Strand 2
A
401 405anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
428 432anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il