Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYF entry

There is 1 chain in PDB entry 3NYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 995PRO 1375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3NYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1012 1023Right-handed alpha
Helix 2
2
A
1040 1044Right-handed 310
Helix 3
3
A
1055 1071Right-handed alpha
Helix 4
4
A
1095 1110Right-handed alpha
Helix 5
5
A
1117 1125Right-handed alpha
Helix 6
6
A
1129 1133Right-handed 310
Helix 7
7
A
1146 1161Right-handed alpha
Helix 8
8
A
1199 1201Right-handed 310
Helix 9
9
A
1202 1211Right-handed alpha
Helix 10
10
A
1275 1290Right-handed alpha
Helix 11
11
A
1337 1350Right-handed alpha
Helix 12
12
A
1355 1360Right-handed alpha
Helix 13
13
A
1364 1369Right-handed alpha
Helix 14
14
A
1370 1374Right-handed 310
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There are 5 sheets in PDB entry 3NYF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1003first strand
Strand 2
A
1188 1192parallel
Strand 3
A
1180 1184anti-parallel
Strand 4
A
1173 1177anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1164 1166first strand
Strand 2
A
1028 1031parallel
Strand 3
A
1006 1009parallel
Strand 4
A
1194 1197parallel
Strand 5
A
1324 1328parallel
Strand 6
A
1314 1317anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1048 1049first strand
Strand 2
A
1143 1145anti-parallel
Strand 3
A
1082 1084anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1116first strand
Strand 2
A
1136 1139anti-parallel
Strand 3
A
1087 1090anti-parallel
Strand 4
A
1240 1243parallel
Strand 5
A
1249 1253anti-parallel
Strand 6
A
1256 1260anti-parallel
Strand 7
A
1218 1227anti-parallel
Strand 8
A
1265 1266anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1116first strand
Strand 2
A
1136 1139anti-parallel
Strand 3
A
1087 1090anti-parallel
Strand 4
A
1240 1243parallel
Strand 5
A
1249 1253anti-parallel
Strand 6
A
1256 1260anti-parallel
Strand 7
A
1218 1227anti-parallel
Strand 8
A
1299 1307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il