Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYI entry

There are 2 chains in PDB entry 3NYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 293
B
 ASN -1LEU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3NYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
13 21Right-handed alpha
Helix 3
3
A
44 55Right-handed alpha
Helix 4
4
A
66 79Right-handed alpha
Helix 5
5
A
95 111Right-handed alpha
Helix 6
6
A
124 141Right-handed alpha
Helix 7
7
A
144 159Right-handed alpha
Helix 8
8
A
168 174Right-handed alpha
Helix 9
9
A
177 181Right-handed 310
Helix 10
10
A
183 187Right-handed 310
Helix 11
11
A
209 229Right-handed alpha
Helix 12
12
A
242 258Right-handed alpha
Helix 13
13
A
262 266Right-handed 310
Helix 14
14
A
270 278Right-handed alpha
Helix 15
15
A
290 293Right-handed 310
Helix 16
16
B
9 11Right-handed 310
Helix 17
17
B
13 21Right-handed alpha
Helix 18
18
B
44 55Right-handed alpha
Helix 19
19
B
66 79Right-handed alpha
Helix 20
20
B
95 111Right-handed alpha
Helix 21
21
B
124 141Right-handed alpha
Helix 22
22
B
144 159Right-handed alpha
Helix 23
23
B
168 175Right-handed alpha
Helix 24
24
B
177 181Right-handed 310
Helix 25
25
B
182 187Right-handed alpha
Helix 26
26
B
209 229Right-handed alpha
Helix 27
27
B
242 258Right-handed alpha
Helix 28
28
B
262 266Right-handed 310
Helix 29
29
B
270 278Right-handed alpha
Helix 30
30
B
290 293Right-handed 310
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There are 6 sheets in PDB entry 3NYI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
3 7parallel
Strand 3
A
84 88parallel
Strand 4
A
116 120parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
28 30anti-parallel
Strand 3
A
61 63anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 207first strand
Strand 2
A
191 197anti-parallel
Strand 3
A
160 164anti-parallel
Strand 4
A
282 288anti-parallel
Strand 5
A
233 239anti-parallel
Strand 6
A
267 268parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
3 7parallel
Strand 3
B
84 88parallel
Strand 4
B
116 120parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
28 30anti-parallel
Strand 3
B
61 63anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 207first strand
Strand 2
B
191 197anti-parallel
Strand 3
B
160 164anti-parallel
Strand 4
B
282 288anti-parallel
Strand 5
B
233 239anti-parallel
Strand 6
B
267 268parallel
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