Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYR entry

There is 1 chain in PDB entry 3NYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ARG 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3NYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed alpha
Helix 2
2
A
31 44Right-handed alpha
Helix 3
3
A
58 72Right-handed alpha
Helix 4
4
A
83 95Right-handed alpha
Helix 5
5
A
108 112Right-handed 310
Helix 6
6
A
157 172Right-handed alpha
Helix 7
7
A
187 192Right-handed alpha
Helix 8
8
A
195 202Right-handed alpha
Helix 9
9
A
212 221Right-handed alpha
Helix 10
10
A
230 241Right-handed alpha
Helix 11
11
A
244 254Right-handed alpha
Helix 12
12
A
265 277Right-handed alpha
Helix 13
13
A
287 289Right-handed 310
Helix 14
14
A
350 357Right-handed alpha
Helix 15
15
A
397 406Right-handed alpha
Helix 16
16
A
442 454Right-handed alpha
Helix 17
17
A
455 459Right-handed 310
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There are 6 sheets in PDB entry 3NYR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
20 24anti-parallel
Strand 3
A
204 207parallel
Strand 4
A
178 181parallel
Strand 5
A
226 229parallel
Strand 6
A
256 259parallel
Strand 7
A
281 286parallel
Strand 8
A
290 294anti-parallel
Strand 9
A
308 309anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
51 54parallel
Strand 3
A
98 101parallel
Strand 4
A
115 118parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 143first strand
Strand 2
A
151 156anti-parallel
Strand 3
A
346 347anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 318first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
364 372anti-parallel
Strand 4
A
378 383anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 391first strand
Strand 2
A
394 396anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 421first strand
Strand 2
A
425 434anti-parallel
Strand 3
A
462 465parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il