Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYT entry

There is 1 chain in PDB entry 3NYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3NYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 29Right-handed alpha
Helix 2
2
A
34 49Right-handed alpha
Helix 3
3
A
58 70Right-handed alpha
Helix 4
4
A
86 95Right-handed alpha
Helix 5
5
A
112 120Right-handed 310
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
138 149Right-handed alpha
Helix 8
8
A
200 211Right-handed alpha
Helix 9
9
A
231 244Right-handed alpha
Helix 10
10
A
244 266Right-handed alpha
Helix 11
11
A
290 302Right-handed alpha
Helix 12
12
A
312 320Right-handed 310
Helix 13
13
A
326 335Right-handed alpha
Helix 14
14
A
346 359Right-handed alpha
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There are 5 sheets in PDB entry 3NYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
154 156parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
77 81parallel
Strand 3
A
124 127parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
164 165anti-parallel
Strand 3
A
277 278anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
220 221anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
336 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il