Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYU entry

There are 8 chains in PDB entry 3NYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 184
A
 PRO 186ASN 359
B
 ILE 2SER 184
B
 PRO 186THR 358
C
 ILE 2SER 184
C
 PRO 186THR 358
D
 ILE 2SER 184
D
 PRO 186THR 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3NYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 29Right-handed alpha
Helix 2
2
A
34 49Right-handed alpha
Helix 3
3
A
58 70Right-handed alpha
Helix 4
4
A
86 95Right-handed alpha
Helix 5
5
A
112 117Right-handed alpha
Helix 6
6
A
118 120Right-handed 310
Helix 7
7
A
131 135Right-handed 310
Helix 8
8
A
138 149Right-handed alpha
Helix 9
9
A
200 212Right-handed alpha
Helix 10
10
A
231 244Right-handed alpha
Helix 11
11
A
244 266Right-handed alpha
Helix 12
12
A
290 301Right-handed alpha
Helix 13
13
A
312 320Right-handed 310
Helix 14
14
A
326 335Right-handed alpha
Helix 15
15
A
346 359Right-handed alpha
Helix 16
16
B
7 29Right-handed alpha
Helix 17
17
B
34 49Right-handed alpha
Helix 18
18
B
58 71Right-handed alpha
Helix 19
19
B
86 95Right-handed alpha
Helix 20
20
B
112 120Right-handed 310
Helix 21
21
B
131 135Right-handed 310
Helix 22
22
B
138 149Right-handed alpha
Helix 23
23
B
200 211Right-handed alpha
Helix 24
24
B
231 244Right-handed alpha
Helix 25
25
B
244 266Right-handed alpha
Helix 26
26
B
290 301Right-handed alpha
Helix 27
27
B
312 320Right-handed 310
Helix 28
28
B
326 335Right-handed alpha
Helix 29
29
B
346 355Right-handed alpha
Helix 30
30
C
7 29Right-handed alpha
Helix 31
31
C
34 49Right-handed alpha
Helix 32
32
C
58 71Right-handed alpha
Helix 33
33
C
86 95Right-handed alpha
Helix 34
34
C
112 120Right-handed 310
Helix 35
35
C
131 135Right-handed 310
Helix 36
36
C
138 149Right-handed alpha
Helix 37
37
C
200 212Right-handed alpha
Helix 38
38
C
231 244Right-handed alpha
Helix 39
39
C
244 266Right-handed alpha
Helix 40
40
C
290 302Right-handed alpha
Helix 41
41
C
312 320Right-handed 310
Helix 42
42
C
326 335Right-handed alpha
Helix 43
43
C
346 348Right-handed 310
Helix 44
44
C
349 358Right-handed alpha
Helix 45
45
D
7 29Right-handed alpha
Helix 46
46
D
34 49Right-handed alpha
Helix 47
47
D
58 70Right-handed alpha
Helix 48
48
D
86 95Right-handed alpha
Helix 49
49
D
112 120Right-handed alpha
Helix 50
50
D
131 135Right-handed 310
Helix 51
51
D
138 148Right-handed alpha
Helix 52
52
D
200 211Right-handed alpha
Helix 53
53
D
231 244Right-handed alpha
Helix 54
54
D
244 266Right-handed alpha
Helix 55
55
D
290 301Right-handed alpha
Helix 56
56
D
312 316Right-handed 310
Helix 57
57
D
326 335Right-handed alpha
Helix 58
58
D
346 358Right-handed alpha
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There are 17 sheets in PDB entry 3NYU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
154 156parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
77 81parallel
Strand 3
A
124 127parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
164 165anti-parallel
Strand 3
A
277 278anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
336 339anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
176 180anti-parallel
Strand 4
B
154 156parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
77 81parallel
Strand 3
B
124 127parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
164 165anti-parallel
Strand 3
B
277 278anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
336 339anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
194 198anti-parallel
Strand 3
C
176 180anti-parallel
Strand 4
C
154 156parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 102first strand
Strand 2
C
77 81parallel
Strand 3
C
124 127parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 169first strand
Strand 2
C
164 165anti-parallel
Strand 3
C
277 278anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 217first strand
Strand 2
C
220 221anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
284 287first strand
Strand 2
C
336 339anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 56first strand
Strand 2
D
194 198anti-parallel
Strand 3
D
176 180anti-parallel
Strand 4
D
154 156parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 102first strand
Strand 2
D
77 81parallel
Strand 3
D
124 127parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
168 169first strand
Strand 2
D
164 165anti-parallel
Strand 3
D
277 278anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
284 287first strand
Strand 2
D
336 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il