Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYV entry

There is 1 chain in PDB entry 3NYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 42ASN 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3NYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 50Right-handed alpha
Helix 2
2
A
92 104Right-handed alpha
Helix 3
3
A
135 142Right-handed alpha
Helix 4
4
A
147 168Right-handed alpha
Helix 5
5
A
176 178Right-handed 310
Helix 6
6
A
197 202Right-handed alpha
Helix 7
7
A
207 212Right-handed alpha
Helix 8
8
A
213 217Right-handed 310
Helix 9
9
A
219 225Right-handed alpha
Helix 10
10
A
229 246Right-handed alpha
Helix 11
11
A
254 265Right-handed alpha
Helix 12
12
A
271 277Right-handed 310
Helix 13
13
A
278 289Right-handed alpha
Helix 14
14
A
292 296Right-handed 310
Helix 15
15
A
298 304Right-handed alpha
Helix 16
16
A
305 312Right-handed alpha
Helix 17
17
A
323 368Right-handed alpha
Helix 18
18
A
377 389Right-handed alpha
Helix 19
19
A
394 398Right-handed 310
Helix 20
20
A
399 415Right-handed alpha
Helix 21
21
A
424 451Right-handed alpha
Helix 22
22
A
460 470Right-handed alpha
Helix 23
23
A
473 485Right-handed alpha
Helix 24
24
A
494 504Right-handed alpha
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There are 4 sheets in PDB entry 3NYV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 60first strand
Strand 2
A
63 70anti-parallel
Strand 3
A
76 83anti-parallel
Strand 4
A
123 128anti-parallel
Strand 5
A
114 119anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
191 193anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
421 423anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
491 493anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il