Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYW entry

There are 4 chains in PDB entry 3NYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLU 241
B
 GLN 4ILE 240
C
 GLN 4GLU 241
D
 GLN 4ILE 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 3NYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
38 53Right-handed alpha
Helix 3
3
A
68 84Right-handed alpha
Helix 4
4
A
103 116Right-handed alpha
Helix 5
5
A
116 134Right-handed alpha
Helix 6
6
A
154 175Right-handed alpha
Helix 7
7
A
191 197Right-handed alpha
Helix 8
8
A
202 206Right-handed 310
Helix 9
9
A
208 221Right-handed alpha
Helix 10
10
A
236 241Right-handed alpha
Helix 11
11
B
15 29Right-handed alpha
Helix 12
12
B
38 53Right-handed alpha
Helix 13
13
B
68 84Right-handed alpha
Helix 14
14
B
103 116Right-handed alpha
Helix 15
15
B
116 134Right-handed alpha
Helix 16
16
B
154 175Right-handed alpha
Helix 17
17
B
208 222Right-handed alpha
Helix 18
18
C
15 29Right-handed alpha
Helix 19
19
C
38 53Right-handed alpha
Helix 20
20
C
68 84Right-handed alpha
Helix 21
21
C
103 116Right-handed alpha
Helix 22
22
C
116 134Right-handed alpha
Helix 23
23
C
151 153Right-handed 310
Helix 24
24
C
154 175Right-handed alpha
Helix 25
25
C
191 197Right-handed alpha
Helix 26
26
C
208 222Right-handed alpha
Helix 27
27
C
236 241Right-handed alpha
Helix 28
28
D
15 28Right-handed alpha
Helix 29
29
D
40 50Right-handed alpha
Helix 30
30
D
68 84Right-handed alpha
Helix 31
31
D
103 116Right-handed alpha
Helix 32
32
D
116 134Right-handed alpha
Helix 33
33
D
154 175Right-handed alpha
Helix 34
34
D
208 222Right-handed alpha
Helix 35
35
D
236 240Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3NYW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
86 91parallel
Strand 5
A
136 141parallel
Strand 6
A
179 186parallel
Strand 7
A
230 235parallel
Strand 8
C
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
C
230 235anti-parallel
Strand 3
C
179 186parallel
Strand 4
C
136 141parallel
Strand 5
C
86 91parallel
Strand 6
C
7 11parallel
Strand 7
C
31 36parallel
Strand 8
C
60 63parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
31 36parallel
Strand 3
B
7 11parallel
Strand 4
B
86 91parallel
Strand 5
B
136 141parallel
Strand 6
B
179 185parallel
Strand 7
B
230 232parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
D
230 235anti-parallel
Strand 3
D
179 186parallel
Strand 4
D
136 141parallel
Strand 5
D
86 91parallel
Strand 6
D
7 11parallel
Strand 7
D
31 36parallel
Strand 8
D
60 63parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
D
226 227anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il