Analysis of interatomic Contacts of Structural Units in PDB entry:
3NZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NZE entry

There are 2 chains in PDB entry 3NZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 55SER 315
B
 ALA 55PHE 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3NZE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 73Right-handed alpha
Helix 2
2
A
86 103Right-handed alpha
Helix 3
3
A
104 106Right-handed 310
Helix 4
4
A
117 126Right-handed alpha
Helix 5
5
A
150 166Right-handed alpha
Helix 6
6
A
180 188Right-handed alpha
Helix 7
7
A
190 202Right-handed alpha
Helix 8
8
A
228 238Right-handed alpha
Helix 9
9
A
258 264Right-handed 310
Helix 10
10
A
268 274Right-handed alpha
Helix 11
11
A
284 286Right-handed 310
Helix 12
12
A
287 297Right-handed alpha
Helix 13
13
A
307 314Right-handed alpha
Helix 14
14
B
60 73Right-handed alpha
Helix 15
15
B
86 103Right-handed alpha
Helix 16
16
B
104 106Right-handed 310
Helix 17
17
B
117 125Right-handed alpha
Helix 18
18
B
150 166Right-handed alpha
Helix 19
19
B
180 188Right-handed alpha
Helix 20
20
B
190 201Right-handed alpha
Helix 21
21
B
228 230Right-handed 310
Helix 22
22
B
231 238Right-handed alpha
Helix 23
23
B
258 264Right-handed 310
Helix 24
24
B
268 273Right-handed alpha
Helix 25
25
B
284 286Right-handed 310
Helix 26
26
B
287 297Right-handed alpha
Helix 27
27
B
307 315Right-handed alpha
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There are 4 sheets in PDB entry 3NZE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
302 306parallel
Strand 3
A
277 282parallel
Strand 4
A
205 208parallel
Strand 5
A
111 114parallel
Strand 6
A
136 139parallel
Strand 7
A
168 170parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
247 250anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
302 306parallel
Strand 3
B
277 282parallel
Strand 4
B
205 208parallel
Strand 5
B
111 114parallel
Strand 6
B
136 139parallel
Strand 7
B
168 170parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il