Analysis of interatomic Contacts of Structural Units in PDB entry:
3NZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NZP entry

There are 2 chains in PDB entry 3NZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ILE 609
B
 MSE 1HIS 619
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3NZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
30 41Right-handed alpha
Helix 3
3
A
51 73Right-handed alpha
Helix 4
4
A
86 88Right-handed 310
Helix 5
5
A
90 101Right-handed alpha
Helix 6
6
A
102 105Right-handed 310
Helix 7
7
A
112 123Right-handed alpha
Helix 8
8
A
136 149Right-handed alpha
Helix 9
9
A
159 171Right-handed alpha
Helix 10
10
A
207 221Right-handed alpha
Helix 11
11
A
241 261Right-handed alpha
Helix 12
12
A
291 310Right-handed alpha
Helix 13
13
A
322 327Right-handed alpha
Helix 14
14
A
345 349Right-handed 310
Helix 15
15
A
356 369Right-handed alpha
Helix 16
16
A
373 393Right-handed alpha
Helix 17
17
A
398 420Right-handed alpha
Helix 18
18
A
450 456Right-handed alpha
Helix 19
19
A
555 563Right-handed alpha
Helix 20
20
A
566 580Right-handed alpha
Helix 21
21
A
585 601Right-handed alpha
Helix 22
22
B
10 12Right-handed 310
Helix 23
23
B
30 41Right-handed alpha
Helix 24
24
B
51 73Right-handed alpha
Helix 25
25
B
86 88Right-handed 310
Helix 26
26
B
90 101Right-handed alpha
Helix 27
27
B
102 105Right-handed 310
Helix 28
28
B
112 123Right-handed alpha
Helix 29
29
B
136 149Right-handed alpha
Helix 30
30
B
159 171Right-handed alpha
Helix 31
31
B
207 221Right-handed alpha
Helix 32
32
B
241 261Right-handed alpha
Helix 33
33
B
291 310Right-handed alpha
Helix 34
34
B
322 327Right-handed alpha
Helix 35
35
B
345 349Right-handed 310
Helix 36
36
B
356 369Right-handed alpha
Helix 37
37
B
373 393Right-handed alpha
Helix 38
38
B
398 421Right-handed alpha
Helix 39
39
B
450 456Right-handed alpha
Helix 40
40
B
555 563Right-handed alpha
Helix 41
41
B
566 580Right-handed alpha
Helix 42
42
B
585 601Right-handed alpha
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There are 8 sheets in PDB entry 3NZP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
21 23anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
510 513anti-parallel
Strand 3
A
330 340anti-parallel
Strand 4
A
439 442anti-parallel
Strand 5
A
479 480parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
510 513anti-parallel
Strand 3
A
330 340anti-parallel
Strand 4
A
47 50anti-parallel
Strand 5
A
534 540parallel
Strand 6
A
545 551anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
107 110parallel
Strand 3
A
128 131parallel
Strand 4
A
152 157parallel
Strand 5
A
179 183parallel
Strand 6
A
227 231parallel
Strand 7
A
268 272parallel
Strand 8
A
316 319parallel
Strand 9
A
79 84parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 16first strand
Strand 2
B
21 23anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 464first strand
Strand 2
B
510 513anti-parallel
Strand 3
B
330 341anti-parallel
Strand 4
B
438 442anti-parallel
Strand 5
B
479 480parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 464first strand
Strand 2
B
510 513anti-parallel
Strand 3
B
330 341anti-parallel
Strand 4
B
47 50anti-parallel
Strand 5
B
534 540parallel
Strand 6
B
545 551anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 84first strand
Strand 2
B
107 110parallel
Strand 3
B
128 131parallel
Strand 4
B
152 157parallel
Strand 5
B
179 183parallel
Strand 6
B
227 231parallel
Strand 7
B
268 272parallel
Strand 8
B
316 319parallel
Strand 9
B
79 84parallel
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