Analysis of interatomic Contacts of Structural Units in PDB entry:
3O01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O01 entry

There are 2 chains in PDB entry 3O01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36GLN 342
B
 GLY 42LYS 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 3O01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 65Right-handed alpha
Helix 2
2
A
69 92Right-handed alpha
Helix 3
3
A
98 109Right-handed alpha
Helix 4
4
A
134 149Right-handed alpha
Helix 5
5
A
149 172Right-handed alpha
Helix 6
6
A
173 176Right-handed 310
Helix 7
7
A
190 207Right-handed alpha
Helix 8
8
A
227 238Right-handed alpha
Helix 9
9
A
241 243Right-handed 310
Helix 10
10
A
258 270Right-handed alpha
Helix 11
11
A
284 339Right-handed alpha
Helix 12
12
B
43 65Right-handed alpha
Helix 13
13
B
69 93Right-handed alpha
Helix 14
14
B
98 109Right-handed alpha
Helix 15
15
B
134 149Right-handed alpha
Helix 16
16
B
149 172Right-handed alpha
Helix 17
17
B
190 207Right-handed alpha
Helix 18
18
B
227 239Right-handed alpha
Helix 19
19
B
241 243Right-handed 310
Helix 20
20
B
258 271Right-handed alpha
Helix 21
21
B
284 338Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3O01. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
186 189anti-parallel
Strand 3
A
280 283anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
251 255anti-parallel
Strand 3
A
245 248anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
186 189anti-parallel
Strand 3
B
280 283anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 215first strand
Strand 2
B
251 255anti-parallel
Strand 3
B
245 248anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il