Analysis of interatomic Contacts of Structural Units in PDB entry:
3O08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O08 entry

There are 2 chains in PDB entry 3O08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15GLU 485
B
 LYS 7GLU 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3O08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 35Right-handed alpha
Helix 2
2
A
37 57Right-handed alpha
Helix 3
3
A
115 119Right-handed 310
Helix 4
4
A
122 142Right-handed alpha
Helix 5
5
A
186 198Right-handed alpha
Helix 6
6
A
209 222Right-handed alpha
Helix 7
7
A
244 250Right-handed 310
Helix 8
8
A
268 272Right-handed 310
Helix 9
9
A
282 292Right-handed alpha
Helix 10
10
A
298 305Right-handed alpha
Helix 11
11
A
308 323Right-handed alpha
Helix 12
12
A
343 352Right-handed alpha
Helix 13
13
A
357 369Right-handed alpha
Helix 14
14
A
373 407Right-handed alpha
Helix 15
15
A
417 423Right-handed alpha
Helix 16
16
A
425 439Right-handed alpha
Helix 17
17
A
444 448Right-handed 310
Helix 18
18
A
460 477Right-handed alpha
Helix 19
19
B
20 35Right-handed alpha
Helix 20
20
B
37 56Right-handed alpha
Helix 21
21
B
115 119Right-handed 310
Helix 22
22
B
122 142Right-handed alpha
Helix 23
23
B
186 198Right-handed alpha
Helix 24
24
B
209 222Right-handed alpha
Helix 25
25
B
244 250Right-handed 310
Helix 26
26
B
268 272Right-handed 310
Helix 27
27
B
282 291Right-handed alpha
Helix 28
28
B
298 305Right-handed alpha
Helix 29
29
B
308 323Right-handed alpha
Helix 30
30
B
332 337Right-handed 310
Helix 31
31
B
343 352Right-handed alpha
Helix 32
32
B
357 369Right-handed alpha
Helix 33
33
B
373 407Right-handed alpha
Helix 34
34
B
417 423Right-handed alpha
Helix 35
35
B
425 439Right-handed alpha
Helix 36
36
B
444 448Right-handed 310
Helix 37
37
B
460 477Right-handed alpha
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There are 6 sheets in PDB entry 3O08. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
262 266anti-parallel
Strand 3
A
235 242anti-parallel
Strand 4
A
225 231anti-parallel
Strand 5
A
411 416parallel
Strand 6
A
450 454parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 113first strand
Strand 2
A
91 100anti-parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
150 155parallel
Strand 5
A
202 208parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
169 170anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
262 266anti-parallel
Strand 3
B
235 242anti-parallel
Strand 4
B
225 231anti-parallel
Strand 5
B
411 416parallel
Strand 6
B
450 454parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 113first strand
Strand 2
B
91 100anti-parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
150 156parallel
Strand 5
B
202 208parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
169 170anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il