Analysis of interatomic Contacts of Structural Units in PDB entry:
3O0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3O0E entry

There are 12 chains in PDB entry 3O0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	PHE 340
B	ALA 1	PHE 340
C	ALA 1	PHE 340
D	ALA 1	PHE 340
E	ALA 1	PHE 340
F	ALA 1	PHE 340
L	SER 2	SER 15
M	SER 2	HIS 14
N	SER 2	HIS 14
O	SER 2	THR 16
P	SER 2	HIS 14
Q	SER 2	THR 16

There are 24 helices in PDB entry 3O0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	110	Right-handed alpha
Helix 2	AA2	A	111	113	Right-handed 310
Helix 3	AA3	A	143	147	Right-handed alpha
Helix 4	AA4	A	197	202	Right-handed alpha
Helix 5	AA5	B	105	110	Right-handed alpha
Helix 6	AA6	B	111	113	Right-handed 310
Helix 7	AA7	B	143	147	Right-handed alpha
Helix 8	AA8	B	197	202	Right-handed alpha
Helix 9	AA9	C	105	110	Right-handed alpha
Helix 10	AB1	C	111	113	Right-handed 310
Helix 11	AB2	C	143	147	Right-handed alpha
Helix 12	AB3	C	197	202	Right-handed alpha
Helix 13	AB4	D	105	110	Right-handed alpha
Helix 14	AB5	D	111	113	Right-handed 310
Helix 15	AB6	D	143	147	Right-handed alpha
Helix 16	AB7	D	197	202	Right-handed alpha
Helix 17	AB8	E	105	110	Right-handed alpha
Helix 18	AB9	E	111	113	Right-handed 310
Helix 19	AC1	E	143	147	Right-handed alpha
Helix 20	AC2	E	197	202	Right-handed alpha
Helix 21	AC3	F	105	110	Right-handed alpha
Helix 22	AC4	F	111	113	Right-handed 310
Helix 23	AC5	F	142	147	Right-handed alpha
Helix 24	AC6	F	197	202	Right-handed alpha

There are 16 sheets in PDB entry 3O0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	9	23	anti-parallel
Strand 3	A	40	50	anti-parallel
Strand 4	A	56	66	anti-parallel
Strand 5	A	80	90	anti-parallel
Strand 6	A	94	102	anti-parallel
Strand 7	A	132	133	anti-parallel

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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	94	102	anti-parallel
Strand 3	A	136	142	anti-parallel
Strand 4	A	151	158	anti-parallel
Strand 5	A	173	182	anti-parallel
Strand 6	A	185	195	anti-parallel
Strand 7	A	210	222	anti-parallel
Strand 8	A	225	235	anti-parallel
Strand 9	A	253	263	anti-parallel
Strand 10	A	269	283	anti-parallel
Strand 11	A	287	302	anti-parallel
Strand 12	A	307	316	anti-parallel
Strand 13	A	331	340	anti-parallel
Strand 14	A	9	23	anti-parallel
Strand 15	A	2	6	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	247	250	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	9	23	anti-parallel
Strand 3	B	40	50	anti-parallel
Strand 4	B	56	66	anti-parallel
Strand 5	B	80	90	anti-parallel
Strand 6	B	94	102	anti-parallel
Strand 7	B	132	133	anti-parallel

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There are 15 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	94	102	anti-parallel
Strand 3	B	136	142	anti-parallel
Strand 4	B	151	158	anti-parallel
Strand 5	B	173	182	anti-parallel
Strand 6	B	185	195	anti-parallel
Strand 7	B	210	222	anti-parallel
Strand 8	B	225	235	anti-parallel
Strand 9	B	253	263	anti-parallel
Strand 10	B	269	283	anti-parallel
Strand 11	B	287	302	anti-parallel
Strand 12	B	307	316	anti-parallel
Strand 13	B	331	340	anti-parallel
Strand 14	B	9	23	anti-parallel
Strand 15	B	2	6	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	247	250	anti-parallel

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There are 19 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	36	37	first strand
Strand 3	C	40	50	first strand
Strand 4	C	56	66	anti-parallel
Strand 5	C	80	90	anti-parallel
Strand 6	C	94	102	anti-parallel
Strand 7	C	132	142	anti-parallel
Strand 8	C	151	158	anti-parallel
Strand 9	C	173	182	anti-parallel
Strand 10	C	185	195	anti-parallel
Strand 11	C	210	222	anti-parallel
Strand 12	C	225	235	anti-parallel
Strand 13	C	253	263	anti-parallel
Strand 14	C	270	283	anti-parallel
Strand 15	C	287	302	anti-parallel
Strand 16	C	307	316	anti-parallel
Strand 17	C	331	340	anti-parallel
Strand 18	C	9	23	anti-parallel
Strand 19	C	36	37	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	242	first strand
Strand 2	C	247	250	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	9	23	anti-parallel
Strand 3	D	40	50	anti-parallel
Strand 4	D	56	66	anti-parallel
Strand 5	D	80	90	anti-parallel
Strand 6	D	94	102	anti-parallel
Strand 7	D	132	133	anti-parallel

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There are 15 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	94	102	anti-parallel
Strand 3	D	136	142	anti-parallel
Strand 4	D	151	158	anti-parallel
Strand 5	D	173	182	anti-parallel
Strand 6	D	185	195	anti-parallel
Strand 7	D	210	222	anti-parallel
Strand 8	D	225	235	anti-parallel
Strand 9	D	253	263	anti-parallel
Strand 10	D	269	283	anti-parallel
Strand 11	D	287	302	anti-parallel
Strand 12	D	307	316	anti-parallel
Strand 13	D	331	340	anti-parallel
Strand 14	D	9	23	anti-parallel
Strand 15	D	2	6	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	242	first strand
Strand 2	D	247	250	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	37	first strand
Strand 2	E	9	23	anti-parallel
Strand 3	E	40	50	anti-parallel
Strand 4	E	56	66	anti-parallel
Strand 5	E	80	90	anti-parallel
Strand 6	E	94	102	anti-parallel
Strand 7	E	132	133	anti-parallel

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There are 15 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	133	first strand
Strand 2	E	94	102	anti-parallel
Strand 3	E	136	142	anti-parallel
Strand 4	E	151	158	anti-parallel
Strand 5	E	173	182	anti-parallel
Strand 6	E	185	195	anti-parallel
Strand 7	E	210	222	anti-parallel
Strand 8	E	225	235	anti-parallel
Strand 9	E	253	263	anti-parallel
Strand 10	E	269	283	anti-parallel
Strand 11	E	287	302	anti-parallel
Strand 12	E	307	316	anti-parallel
Strand 13	E	331	340	anti-parallel
Strand 14	E	9	23	anti-parallel
Strand 15	E	2	6	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	242	first strand
Strand 2	E	247	250	anti-parallel

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There are 19 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	36	37	first strand
Strand 3	F	40	50	first strand
Strand 4	F	56	66	anti-parallel
Strand 5	F	80	90	anti-parallel
Strand 6	F	94	101	anti-parallel
Strand 7	F	133	141	anti-parallel
Strand 8	F	151	158	anti-parallel
Strand 9	F	173	182	anti-parallel
Strand 10	F	185	195	anti-parallel
Strand 11	F	210	222	anti-parallel
Strand 12	F	225	235	anti-parallel
Strand 13	F	253	263	anti-parallel
Strand 14	F	269	283	anti-parallel
Strand 15	F	287	302	anti-parallel
Strand 16	F	307	316	anti-parallel
Strand 17	F	331	340	anti-parallel
Strand 18	F	9	23	anti-parallel
Strand 19	F	36	37	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	242	first strand
Strand 2	F	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3O0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
3O0E