Analysis of interatomic Contacts of Structural Units in PDB entry:
3O0H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O0H entry

There are 2 chains in PDB entry 3O0H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ASP 462
B
 SER 3ASP 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3O0H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
40 47Right-handed alpha
Helix 3
3
A
47 68Right-handed alpha
Helix 4
4
A
69 71Right-handed 310
Helix 5
5
A
80 106Right-handed alpha
Helix 6
6
A
153 157Right-handed 310
Helix 7
7
A
162 166Right-handed 310
Helix 8
8
A
179 192Right-handed alpha
Helix 9
9
A
210 225Right-handed alpha
Helix 10
10
A
273 278Right-handed alpha
Helix 11
11
A
304 308Right-handed 310
Helix 12
12
A
312 329Right-handed alpha
Helix 13
13
A
356 364Right-handed alpha
Helix 14
14
A
376 383Right-handed alpha
Helix 15
15
A
410 424Right-handed alpha
Helix 16
16
A
427 434Right-handed alpha
Helix 17
17
A
441 447Right-handed 310
Helix 18
18
B
14 27Right-handed alpha
Helix 19
19
B
40 47Right-handed alpha
Helix 20
20
B
47 68Right-handed alpha
Helix 21
21
B
80 106Right-handed alpha
Helix 22
22
B
153 157Right-handed 310
Helix 23
23
B
162 166Right-handed 310
Helix 24
24
B
179 192Right-handed alpha
Helix 25
25
B
210 225Right-handed alpha
Helix 26
26
B
273 278Right-handed alpha
Helix 27
27
B
304 308Right-handed 310
Helix 28
28
B
312 329Right-handed alpha
Helix 29
29
B
356 364Right-handed alpha
Helix 30
30
B
376 383Right-handed alpha
Helix 31
31
B
410 424Right-handed alpha
Helix 32
32
B
427 434Right-handed alpha
Helix 33
33
B
441 447Right-handed 310
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There are 13 sheets in PDB entry 3O0H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
31 35parallel
Strand 3
A
6 11parallel
Strand 4
A
131 139parallel
Strand 5
A
122 125anti-parallel
Strand 6
A
115 119anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
31 35parallel
Strand 3
A
6 11parallel
Strand 4
A
131 139parallel
Strand 5
A
300 302parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
B
72 73anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
265 267anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
195 199parallel
Strand 3
A
172 176parallel
Strand 4
A
258 261parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 239first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
253 256anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 344first strand
Strand 2
A
350 354anti-parallel
Strand 3
A
401 407anti-parallel
Strand 4
A
388 395anti-parallel
Strand 5
A
366 374anti-parallel
Strand 6
A
453 456anti-parallel
Strand 7
A
459 460anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
31 34parallel
Strand 3
B
6 11parallel
Strand 4
B
131 139parallel
Strand 5
B
122 125anti-parallel
Strand 6
B
115 119anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
31 34parallel
Strand 3
B
6 11parallel
Strand 4
B
131 139parallel
Strand 5
B
300 302parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
265 267anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
195 199parallel
Strand 3
B
172 176parallel
Strand 4
B
258 261parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 240first strand
Strand 2
B
243 248anti-parallel
Strand 3
B
253 256anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 344first strand
Strand 2
B
350 354anti-parallel
Strand 3
B
401 407anti-parallel
Strand 4
B
388 395anti-parallel
Strand 5
B
366 374anti-parallel
Strand 6
B
453 456anti-parallel
Strand 7
B
459 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il