Analysis of interatomic Contacts of Structural Units in PDB entry:
3O0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O0Q entry

There are 2 chains in PDB entry 3O0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 633
B
 MET 1LEU 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3O0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
16 27Right-handed alpha
Helix 3
3
A
40 54Right-handed alpha
Helix 4
4
A
55 59Right-handed 310
Helix 5
5
A
63 84Right-handed alpha
Helix 6
6
A
90 97Right-handed alpha
Helix 7
7
A
102 107Right-handed alpha
Helix 8
8
A
109 113Right-handed 310
Helix 9
9
A
114 125Right-handed alpha
Helix 10
10
A
142 159Right-handed alpha
Helix 11
11
A
186 199Right-handed alpha
Helix 12
12
A
221 227Right-handed alpha
Helix 13
13
A
250 260Right-handed alpha
Helix 14
14
A
279 294Right-handed alpha
Helix 15
15
A
300 307Right-handed alpha
Helix 16
16
A
350 372Right-handed alpha
Helix 17
17
A
376 387Right-handed alpha
Helix 18
18
A
395 404Right-handed alpha
Helix 19
19
A
409 439Right-handed alpha
Helix 20
20
A
443 446Right-handed 310
Helix 21
21
A
447 452Right-handed alpha
Helix 22
22
A
465 476Right-handed alpha
Helix 23
23
A
493 498Right-handed alpha
Helix 24
24
A
530 537Right-handed alpha
Helix 25
25
A
538 553Right-handed alpha
Helix 26
26
A
562 569Right-handed alpha
Helix 27
27
A
571 575Right-handed 310
Helix 28
28
A
576 589Right-handed alpha
Helix 29
29
A
606 620Right-handed alpha
Helix 30
30
B
2 11Right-handed alpha
Helix 31
31
B
16 27Right-handed alpha
Helix 32
32
B
40 54Right-handed alpha
Helix 33
33
B
55 59Right-handed 310
Helix 34
34
B
66 84Right-handed alpha
Helix 35
35
B
90 97Right-handed alpha
Helix 36
36
B
109 113Right-handed 310
Helix 37
37
B
114 125Right-handed alpha
Helix 38
38
B
142 160Right-handed alpha
Helix 39
39
B
186 199Right-handed alpha
Helix 40
40
B
221 227Right-handed alpha
Helix 41
41
B
250 260Right-handed alpha
Helix 42
42
B
279 294Right-handed alpha
Helix 43
43
B
300 307Right-handed alpha
Helix 44
44
B
350 372Right-handed alpha
Helix 45
45
B
376 387Right-handed alpha
Helix 46
46
B
395 404Right-handed alpha
Helix 47
47
B
409 439Right-handed alpha
Helix 48
48
B
443 446Right-handed 310
Helix 49
49
B
447 452Right-handed alpha
Helix 50
50
B
465 476Right-handed alpha
Helix 51
51
B
493 498Right-handed alpha
Helix 52
52
B
530 537Right-handed alpha
Helix 53
53
B
538 544Right-handed alpha
Helix 54
54
B
545 553Right-handed alpha
Helix 55
55
B
562 569Right-handed alpha
Helix 56
56
B
571 575Right-handed 310
Helix 57
57
B
576 589Right-handed alpha
Helix 58
58
B
606 620Right-handed alpha
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There are 15 sheets in PDB entry 3O0Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
332 339anti-parallel
Strand 3
A
389 394parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
332 339anti-parallel
Strand 3
A
134 136anti-parallel
Strand 4
A
162 166parallel
Strand 5
A
211 216parallel
Strand 6
A
241 246parallel
Strand 7
A
297 299parallel
Strand 8
A
624 629anti-parallel
Strand 9
A
598 601parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
182 183anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
207 208anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 266first strand
Strand 2
A
275 278anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
326 328anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
348 349anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 514first strand
Strand 2
A
526 529anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
332 339anti-parallel
Strand 3
B
389 394parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
332 339anti-parallel
Strand 3
B
134 136anti-parallel
Strand 4
B
162 166parallel
Strand 5
B
211 216parallel
Strand 6
B
241 246parallel
Strand 7
B
297 299parallel
Strand 8
B
624 629anti-parallel
Strand 9
B
598 601parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
182 183anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 266first strand
Strand 2
B
275 278anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
B
326 327anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
348 349anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
511 513first strand
Strand 2
B
527 529anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il