Analysis of interatomic Contacts of Structural Units in PDB entry:
3O1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O1J entry

There are 4 chains in PDB entry 3O1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 49THR 321
B
 GLY 49THR 321
C
 ASP 30SER 329
D
 ASP 30SER 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 3O1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 74Right-handed alpha
Helix 2
2
A
78 103Right-handed alpha
Helix 3
3
A
108 184Right-handed alpha
Helix 4
4
A
187 192Right-handed alpha
Helix 5
5
A
193 201Right-handed alpha
Helix 6
6
A
201 227Right-handed alpha
Helix 7
7
A
231 256Right-handed alpha
Helix 8
8
A
258 275Right-handed alpha
Helix 9
9
A
277 313Right-handed alpha
Helix 10
10
B
50 74Right-handed alpha
Helix 11
11
B
80 85Right-handed alpha
Helix 12
12
B
85 104Right-handed alpha
Helix 13
13
B
108 184Right-handed alpha
Helix 14
14
B
187 201Right-handed alpha
Helix 15
15
B
201 227Right-handed alpha
Helix 16
16
B
231 256Right-handed alpha
Helix 17
17
B
258 275Right-handed alpha
Helix 18
18
B
277 313Right-handed alpha
Helix 19
19
C
42 59Right-handed alpha
Helix 20
20
C
73 88Right-handed alpha
Helix 21
21
C
125 130Right-handed alpha
Helix 22
22
C
139 155Right-handed alpha
Helix 23
23
C
177 188Right-handed alpha
Helix 24
24
C
203 217Right-handed alpha
Helix 25
25
C
226 240Right-handed alpha
Helix 26
26
C
256 263Right-handed alpha
Helix 27
27
C
273 291Right-handed alpha
Helix 28
28
C
311 317Right-handed alpha
Helix 29
29
D
42 60Right-handed alpha
Helix 30
30
D
73 88Right-handed alpha
Helix 31
31
D
106 111Right-handed alpha
Helix 32
32
D
139 155Right-handed alpha
Helix 33
33
D
177 188Right-handed alpha
Helix 34
34
D
203 217Right-handed alpha
Helix 35
35
D
226 239Right-handed alpha
Helix 36
36
D
256 263Right-handed alpha
Helix 37
37
D
273 291Right-handed alpha
Helix 38
38
D
311 317Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3O1J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 67first strand
Strand 2
C
32 37parallel
Strand 3
C
91 94parallel
Strand 4
C
115 117parallel
Strand 5
C
132 136parallel
Strand 6
C
297 298parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 199first strand
Strand 2
C
162 169parallel
Strand 3
C
222 225parallel
Strand 4
C
247 250parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 271first strand
Strand 2
C
303 305anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 67first strand
Strand 2
D
32 37parallel
Strand 3
D
91 94parallel
Strand 4
D
115 117parallel
Strand 5
D
132 136parallel
Strand 6
D
297 298parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
192 199first strand
Strand 2
D
162 169parallel
Strand 3
D
222 225parallel
Strand 4
D
247 250parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
269 271first strand
Strand 2
D
303 305anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il