Analysis of interatomic Contacts of Structural Units in PDB entry:
3O1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O1K entry

There are 4 chains in PDB entry 3O1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ARG 128
B
 LEU 11ARG 128
C
 SER 12ARG 128
D
 LEU 11ARG 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 3O1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 36Right-handed 310
Helix 2
2
A
50 57Right-handed alpha
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
64 78Right-handed alpha
Helix 5
5
A
83 100Right-handed alpha
Helix 6
6
B
32 36Right-handed 310
Helix 7
7
B
50 57Right-handed alpha
Helix 8
8
B
58 62Right-handed 310
Helix 9
9
B
64 78Right-handed alpha
Helix 10
10
B
83 99Right-handed alpha
Helix 11
11
C
30 35Right-handed alpha
Helix 12
12
C
50 57Right-handed alpha
Helix 13
13
C
58 62Right-handed 310
Helix 14
14
C
64 79Right-handed alpha
Helix 15
15
C
83 100Right-handed alpha
Helix 16
16
D
50 57Right-handed alpha
Helix 17
17
D
58 62Right-handed 310
Helix 18
18
D
64 79Right-handed alpha
Helix 19
19
D
83 100Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3O1K. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
15 27parallel
Strand 3
A
38 47anti-parallel
Strand 4
A
103 110anti-parallel
Strand 5
A
119 127anti-parallel
Strand 6
C
15 27anti-parallel
Strand 7
C
80 81parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 27first strand
Strand 2
C
38 47anti-parallel
Strand 3
C
104 110anti-parallel
Strand 4
C
119 126anti-parallel
Strand 5
B
15 27anti-parallel
Strand 6
B
80 81parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 27first strand
Strand 2
B
38 47anti-parallel
Strand 3
B
103 110anti-parallel
Strand 4
B
119 127anti-parallel
Strand 5
D
15 27anti-parallel
Strand 6
D
80 81parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 27first strand
Strand 2
D
38 47anti-parallel
Strand 3
D
103 110anti-parallel
Strand 4
D
119 127anti-parallel
Strand 5
A
15 27anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il