Analysis of interatomic Contacts of Structural Units in PDB entry:
3O2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O2J entry

There are 2 chains in PDB entry 3O2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4LEU 378
B
 ILE 6THR 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3O2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
48 62Right-handed alpha
Helix 3
3
A
75 87Right-handed alpha
Helix 4
4
A
111 122Right-handed alpha
Helix 5
5
A
137 151Right-handed alpha
Helix 6
6
A
191 203Right-handed alpha
Helix 7
7
A
208 211Right-handed 310
Helix 8
8
A
225 229Right-handed 310
Helix 9
9
A
246 257Right-handed alpha
Helix 10
10
A
273 296Right-handed alpha
Helix 11
11
A
318 329Right-handed alpha
Helix 12
12
B
16 30Right-handed alpha
Helix 13
13
B
48 63Right-handed alpha
Helix 14
14
B
75 87Right-handed alpha
Helix 15
15
B
111 122Right-handed alpha
Helix 16
16
B
137 151Right-handed alpha
Helix 17
17
B
166 179Right-handed alpha
Helix 18
18
B
191 193Right-handed 310
Helix 19
19
B
194 204Right-handed alpha
Helix 20
20
B
246 257Right-handed alpha
Helix 21
21
B
273 291Right-handed alpha
Helix 22
22
B
307 312Right-handed alpha
Helix 23
23
B
316 329Right-handed alpha
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There are 6 sheets in PDB entry 3O2J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 44first strand
Strand 2
A
5 13parallel
Strand 3
A
67 69parallel
Strand 4
A
90 92parallel
Strand 5
A
104 106parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
126 131parallel
Strand 3
A
185 189parallel
Strand 4
A
213 216parallel
Strand 5
A
235 240parallel
Strand 6
A
351 358anti-parallel
Strand 7
A
361 369anti-parallel
Strand 8
A
375 377anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
337 339anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 44first strand
Strand 2
B
7 13parallel
Strand 3
B
66 69parallel
Strand 4
B
89 92parallel
Strand 5
B
104 106parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 158first strand
Strand 2
B
126 131parallel
Strand 3
B
185 189parallel
Strand 4
B
213 216parallel
Strand 5
B
235 240parallel
Strand 6
B
351 358anti-parallel
Strand 7
B
361 369anti-parallel
Strand 8
B
375 377anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 334first strand
Strand 2
B
337 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il