Analysis of interatomic Contacts of Structural Units in PDB entry:
3O3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O3V entry

There are 3 chains in PDB entry 3O3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 41TYR 375
B
 GLU 41TYR 375
C
 GLU 41TYR 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3O3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 55Right-handed alpha
Helix 2
2
A
94 96Right-handed 310
Helix 3
3
A
97 111Right-handed alpha
Helix 4
4
A
119 124Right-handed alpha
Helix 5
5
A
139 145Right-handed alpha
Helix 6
6
A
153 160Right-handed alpha
Helix 7
7
A
166 171Right-handed alpha
Helix 8
8
A
189 203Right-handed alpha
Helix 9
9
A
205 214Right-handed alpha
Helix 10
10
A
214 219Right-handed alpha
Helix 11
11
A
257 262Right-handed alpha
Helix 12
12
A
266 279Right-handed alpha
Helix 13
13
A
280 283Right-handed 310
Helix 14
14
A
284 295Right-handed alpha
Helix 15
15
A
342 344Right-handed 310
Helix 16
16
A
356 373Right-handed alpha
Helix 17
17
B
42 55Right-handed alpha
Helix 18
18
B
94 96Right-handed 310
Helix 19
19
B
97 111Right-handed alpha
Helix 20
20
B
119 124Right-handed alpha
Helix 21
21
B
139 145Right-handed alpha
Helix 22
22
B
152 160Right-handed alpha
Helix 23
23
B
166 171Right-handed alpha
Helix 24
24
B
189 203Right-handed alpha
Helix 25
25
B
205 214Right-handed alpha
Helix 26
26
B
214 219Right-handed alpha
Helix 27
27
B
257 262Right-handed alpha
Helix 28
28
B
266 279Right-handed alpha
Helix 29
29
B
280 283Right-handed 310
Helix 30
30
B
284 295Right-handed alpha
Helix 31
31
B
342 344Right-handed 310
Helix 32
32
B
356 373Right-handed alpha
Helix 33
33
C
42 55Right-handed alpha
Helix 34
34
C
94 96Right-handed 310
Helix 35
35
C
97 111Right-handed alpha
Helix 36
36
C
119 124Right-handed alpha
Helix 37
37
C
139 145Right-handed alpha
Helix 38
38
C
153 160Right-handed alpha
Helix 39
39
C
166 171Right-handed alpha
Helix 40
40
C
188 203Right-handed alpha
Helix 41
41
C
205 214Right-handed alpha
Helix 42
42
C
214 219Right-handed alpha
Helix 43
43
C
257 262Right-handed alpha
Helix 44
44
C
266 279Right-handed alpha
Helix 45
45
C
280 283Right-handed 310
Helix 46
46
C
284 295Right-handed alpha
Helix 47
47
C
342 344Right-handed 310
Helix 48
48
C
356 373Right-handed alpha
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There are 9 sheets in PDB entry 3O3V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
68 78anti-parallel
Strand 3
A
58 65anti-parallel
Strand 4
A
346 352anti-parallel
Strand 5
A
335 341anti-parallel
Strand 6
A
324 330anti-parallel
Strand 7
A
316 318anti-parallel
Strand 8
A
310 311anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
263 265anti-parallel
Strand 3
A
224 225anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
129 131anti-parallel
Strand 3
A
174 175parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
68 78anti-parallel
Strand 3
B
58 65anti-parallel
Strand 4
B
346 352anti-parallel
Strand 5
B
335 341anti-parallel
Strand 6
B
324 330anti-parallel
Strand 7
B
316 318anti-parallel
Strand 8
B
310 311anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
263 265anti-parallel
Strand 3
B
224 225anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
129 131anti-parallel
Strand 3
B
174 175parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 84first strand
Strand 2
C
68 78anti-parallel
Strand 3
C
58 65anti-parallel
Strand 4
C
346 352anti-parallel
Strand 5
C
335 341anti-parallel
Strand 6
C
324 330anti-parallel
Strand 7
C
316 318anti-parallel
Strand 8
C
310 311anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 92first strand
Strand 2
C
263 265anti-parallel
Strand 3
C
224 225anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
129 131anti-parallel
Strand 3
C
174 175parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il