Analysis of interatomic Contacts of Structural Units in PDB entry:
3O47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O47 entry

There are 2 chains in PDB entry 3O47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5ASN 309
B
 MET 1ARG 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3O47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
36 38Right-handed 310
Helix 3
3
A
42 53Right-handed alpha
Helix 4
4
A
68 78Right-handed alpha
Helix 5
5
A
79 89Right-handed alpha
Helix 6
6
A
98 105Right-handed alpha
Helix 7
7
A
105 120Right-handed alpha
Helix 8
8
A
159 167Right-handed alpha
Helix 9
9
A
207 213Right-handed alpha
Helix 10
10
A
229 242Right-handed alpha
Helix 11
11
A
243 247Right-handed 310
Helix 12
12
A
265 274Right-handed alpha
Helix 13
13
A
295 308Right-handed alpha
Helix 14
14
B
3 16Right-handed alpha
Helix 15
15
B
36 38Right-handed 310
Helix 16
16
B
42 51Right-handed alpha
Helix 17
17
B
68 78Right-handed alpha
Helix 18
18
B
79 89Right-handed alpha
Helix 19
19
B
98 105Right-handed alpha
Helix 20
20
B
105 120Right-handed alpha
Helix 21
21
B
159 168Right-handed alpha
Helix 22
22
B
207 213Right-handed alpha
Helix 23
23
B
229 242Right-handed alpha
Helix 24
24
B
243 247Right-handed 310
Helix 25
25
B
265 274Right-handed alpha
Helix 26
26
B
295 308Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3O47. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
32 34anti-parallel
Strand 3
A
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 178first strand
Strand 2
A
181 188anti-parallel
Strand 3
A
191 197anti-parallel
Strand 4
A
148 154parallel
Strand 5
A
215 223parallel
Strand 6
A
250 256parallel
Strand 7
A
283 287parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
32 34anti-parallel
Strand 3
B
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 178first strand
Strand 2
B
181 188anti-parallel
Strand 3
B
191 197anti-parallel
Strand 4
B
148 154parallel
Strand 5
B
217 223parallel
Strand 6
B
250 256parallel
Strand 7
B
283 287parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il