Analysis of interatomic Contacts of Structural Units in PDB entry:
3O4N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O4N entry

There are 2 chains in PDB entry 3O4N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 59PHE 199
B
 LEU 58PHE 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3O4N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 72Right-handed 310
Helix 2
2
A
97 113Right-handed alpha
Helix 3
3
A
123 128Right-handed alpha
Helix 4
4
A
128 138Right-handed alpha
Helix 5
5
A
153 174Right-handed alpha
Helix 6
6
A
181 195Right-handed alpha
Helix 7
7
B
69 72Right-handed 310
Helix 8
8
B
97 113Right-handed alpha
Helix 9
9
B
123 128Right-handed alpha
Helix 10
10
B
128 138Right-handed alpha
Helix 11
11
B
153 174Right-handed alpha
Helix 12
12
B
181 198Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3O4N. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
76 82anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
117 119parallel
Strand 5
A
141 143parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 93first strand
Strand 2
B
76 82anti-parallel
Strand 3
B
60 67anti-parallel
Strand 4
B
117 119parallel
Strand 5
B
141 143parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il