Analysis of interatomic Contacts of Structural Units in PDB entry:
3O4Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O4Y entry

There is 1 chain in PDB entry 3O4Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 13THR 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3O4Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 20Right-handed alpha
Helix 2
2
A
22 49Right-handed alpha
Helix 3
3
A
51 65Right-handed alpha
Helix 4
4
A
74 84Right-handed alpha
Helix 5
5
A
91 100Right-handed alpha
Helix 6
6
A
109 116Right-handed alpha
Helix 7
7
A
118 122Right-handed 310
Helix 8
8
A
123 135Right-handed alpha
Helix 9
9
A
143 153Right-handed alpha
Helix 10
10
A
161 172Right-handed alpha
Helix 11
11
A
173 175Right-handed 310
Helix 12
12
A
185 193Right-handed alpha
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There are 2 sheets in PDB entry 3O4Y. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
106 108anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
183 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il