Analysis of interatomic Contacts of Structural Units in PDB entry:
3O5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O5T entry

There are 2 chains in PDB entry 3O5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3GLY 297
B
 MET 1LEU 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 3O5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 25Right-handed alpha
Helix 2
2
A
26 28Right-handed 310
Helix 3
3
A
31 40Right-handed alpha
Helix 4
4
A
48 52Right-handed 310
Helix 5
5
A
59 74Right-handed alpha
Helix 6
6
A
79 93Right-handed alpha
Helix 7
7
A
99 113Right-handed alpha
Helix 8
8
A
128 131Right-handed 310
Helix 9
9
A
132 139Right-handed alpha
Helix 10
10
A
142 155Right-handed alpha
Helix 11
11
A
160 179Right-handed alpha
Helix 12
12
A
182 197Right-handed alpha
Helix 13
13
A
198 201Right-handed 310
Helix 14
14
A
212 227Right-handed alpha
Helix 15
15
A
229 239Right-handed alpha
Helix 16
16
A
243 260Right-handed alpha
Helix 17
17
A
261 264Right-handed 310
Helix 18
18
A
265 270Right-handed alpha
Helix 19
19
A
273 289Right-handed alpha
Helix 20
20
A
290 295Right-handed 310
Helix 21
21
B
12 23Right-handed alpha
Helix 22
22
B
69 82Right-handed alpha
Helix 23
23
B
107 112Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 3O5T.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 36first strand
Strand 2
B
55 65anti-parallel
Strand 3
B
2 8anti-parallel
Strand 4
B
89 95anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il