Analysis of interatomic Contacts of Structural Units in PDB entry:
3O5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O5V entry

There are 2 chains in PDB entry 3O5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0MSE 130
B
 ASN 1LEU 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3O5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 14Right-handed alpha
Helix 2
2
A
23 32Right-handed alpha
Helix 3
3
A
60 68Right-handed alpha
Helix 4
4
A
80 89Right-handed alpha
Helix 5
5
A
105 114Right-handed alpha
Helix 6
6
A
123 129Right-handed alpha
Helix 7
7
B
1 14Right-handed alpha
Helix 8
8
B
23 32Right-handed alpha
Helix 9
9
B
60 68Right-handed alpha
Helix 10
10
B
80 89Right-handed alpha
Helix 11
11
B
105 114Right-handed alpha
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There are 2 sheets in PDB entry 3O5V. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
53 57parallel
Strand 3
A
43 47anti-parallel
Strand 4
A
18 21anti-parallel
Strand 5
A
96 99parallel
Strand 6
A
119 122parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
53 57parallel
Strand 3
B
43 47anti-parallel
Strand 4
B
18 21anti-parallel
Strand 5
B
96 99parallel
Strand 6
B
119 122parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il