Analysis of interatomic Contacts of Structural Units in PDB entry:
3O6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O6F entry

There are 8 chains in PDB entry 3O6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ASP 181
B
 PHE 1ARG 218
C
 ALA 1PHE 196
D
 VAL 1CYS 245
E
 LYS 2PHE 180
F
 PHE 1ARG 218
G
 ALA 1PHE 196
H
 VAL 1ALA 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3O6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 52Right-handed alpha
Helix 2
2
A
56 77Right-handed alpha
Helix 3
3
B
80 82Right-handed 310
Helix 4
4
B
83 91Right-handed alpha
Helix 5
5
B
93 101Right-handed alpha
Helix 6
6
B
102 107Right-handed alpha
Helix 7
7
B
107 116Right-handed alpha
Helix 8
8
B
117 119Right-handed 310
Helix 9
9
C
78 82Right-handed 310
Helix 10
10
D
83 87Right-handed 310
Helix 11
11
D
116 120Right-handed 310
Helix 12
12
D
132 139Right-handed alpha
Helix 13
13
D
198 202Right-handed alpha
Helix 14
14
E
47 52Right-handed alpha
Helix 15
15
E
56 77Right-handed alpha
Helix 16
16
F
80 82Right-handed 310
Helix 17
17
F
83 91Right-handed alpha
Helix 18
18
F
93 107Right-handed alpha
Helix 19
19
F
107 116Right-handed alpha
Helix 20
20
G
78 82Right-handed 310
Helix 21
21
H
83 87Right-handed 310
Helix 22
22
H
116 120Right-handed 310
Helix 23
23
H
131 136Right-handed alpha
Helix 24
24
H
199 201Right-handed 310
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There are 35 sheets in PDB entry 3O6F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
5 15anti-parallel
Strand 5
B
36 47anti-parallel
Strand 6
B
52 61anti-parallel
Strand 7
B
64 70anti-parallel
Strand 8
B
76 78anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
133 134anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
177 178anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
145 146anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
144 151anti-parallel
Strand 3
B
184 190anti-parallel
Strand 4
B
171 173anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
144 151anti-parallel
Strand 3
B
184 190anti-parallel
Strand 4
B
177 178anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
157 162anti-parallel
Strand 3
B
200 205anti-parallel
Strand 4
B
213 215anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
103 108parallel
Strand 3
C
84 91anti-parallel
Strand 4
C
30 37anti-parallel
Strand 5
C
44 49anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 22first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
59 63anti-parallel
Strand 4
C
53 56anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 120first strand
Strand 2
C
131 135anti-parallel
Strand 3
C
171 174anti-parallel
Strand 4
C
152 153anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 161first strand
Strand 2
C
166 168anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
74 79anti-parallel
Strand 4
D
65 68anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
109 114parallel
Strand 3
D
88 95anti-parallel
Strand 4
D
30 36anti-parallel
Strand 5
D
43 49anti-parallel
Strand 6
D
55 56anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
109 114parallel
Strand 3
D
88 95anti-parallel
Strand 4
D
103 105anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 128first strand
Strand 2
D
140 150anti-parallel
Strand 3
D
188 197anti-parallel
Strand 4
D
171 172anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 128first strand
Strand 2
D
140 150anti-parallel
Strand 3
D
188 197anti-parallel
Strand 4
D
177 178anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 166first strand
Strand 2
D
155 161anti-parallel
Strand 3
D
207 214anti-parallel
Strand 4
D
233 240anti-parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 43first strand
Strand 2
E
29 35anti-parallel
Strand 3
E
19 26anti-parallel
Strand 4
E
3 15anti-parallel
Strand 5
F
36 47anti-parallel
Strand 6
F
52 61anti-parallel
Strand 7
F
64 70anti-parallel
Strand 8
F
76 78anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 93first strand
Strand 2
E
103 110anti-parallel
Strand 3
E
148 150anti-parallel
Strand 4
E
133 134anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 93first strand
Strand 2
E
103 110anti-parallel
Strand 3
E
152 153anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
126 127first strand
Strand 2
E
118 123anti-parallel
Strand 3
E
160 166anti-parallel
Strand 4
E
174 179anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
138 139first strand
Strand 2
E
145 146anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
127 132first strand
Strand 2
F
143 151anti-parallel
Strand 3
F
184 191anti-parallel
Strand 4
F
171 173anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
127 132first strand
Strand 2
F
143 151anti-parallel
Strand 3
F
184 191anti-parallel
Strand 4
F
177 178anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
165 166first strand
Strand 2
F
157 162anti-parallel
Strand 3
F
200 205anti-parallel
Strand 4
F
213 215anti-parallel
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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
8 12first strand
Strand 2
G
103 108parallel
Strand 3
G
84 91anti-parallel
Strand 4
G
30 37anti-parallel
Strand 5
G
44 49anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
17 22first strand
Strand 2
G
69 74anti-parallel
Strand 3
G
59 63anti-parallel
Strand 4
G
53 55anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
117 119first strand
Strand 2
G
132 135anti-parallel
Strand 3
G
171 174anti-parallel
Strand 4
G
152 153anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
122 123first strand
Strand 2
H
128 129anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
159 161first strand
Strand 2
G
166 168anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2 5first strand
Strand 2
H
17 23anti-parallel
Strand 3
H
74 79anti-parallel
Strand 4
H
65 68anti-parallel
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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 12first strand
Strand 2
H
109 114parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
30 36anti-parallel
Strand 5
H
43 49anti-parallel
Strand 6
H
55 56anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 12first strand
Strand 2
H
109 114parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
103 105anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
140 150first strand
Strand 2
H
188 197anti-parallel
Strand 3
H
177 178anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
164 166first strand
Strand 2
H
155 161anti-parallel
Strand 3
H
207 214anti-parallel
Strand 4
H
237 240anti-parallel
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