Analysis of interatomic Contacts of Structural Units in PDB entry:
3O6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O6Q entry

There are 4 chains in PDB entry 3O6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 97PRO 241
B
 CYS 9TYR 51
C
 ASP 98PRO 241
D
 CYS 9LYS 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3O6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
97 127Right-handed alpha
Helix 2
2
A
135 153Right-handed alpha
Helix 3
3
A
165 174Right-handed alpha
Helix 4
4
A
178 188Right-handed alpha
Helix 5
5
A
222 240Right-handed alpha
Helix 6
6
B
34 49Right-handed alpha
Helix 7
7
C
98 127Right-handed alpha
Helix 8
8
C
135 153Right-handed alpha
Helix 9
9
C
165 174Right-handed alpha
Helix 10
10
C
178 188Right-handed alpha
Helix 11
11
C
222 240Right-handed alpha
Helix 12
12
D
34 52Right-handed alpha
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There are 6 sheets in PDB entry 3O6Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
B
17 21anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
199 206anti-parallel
Strand 4
A
192 193anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
199 206anti-parallel
Strand 4
D
26 28anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
C
199 206anti-parallel
Strand 3
C
209 216anti-parallel
Strand 4
C
157 162anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
C
199 206anti-parallel
Strand 3
C
192 193anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 133first strand
Strand 2
D
17 21anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il