Analysis of interatomic Contacts of Structural Units in PDB entry:
3O6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O6R entry

There are 2 chains in PDB entry 3O6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASN 257
B
 ALA 2ASN 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3O6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 24Right-handed alpha
Helix 2
2
A
27 44Right-handed alpha
Helix 3
3
A
46 64Right-handed alpha
Helix 4
4
A
175 183Right-handed alpha
Helix 5
5
A
228 230Right-handed 310
Helix 6
6
B
2 24Right-handed alpha
Helix 7
7
B
27 44Right-handed alpha
Helix 8
8
B
46 55Right-handed alpha
Helix 9
9
B
55 64Right-handed alpha
Helix 10
10
B
175 183Right-handed alpha
Helix 11
11
B
218 222Right-handed 310
Helix 12
12
B
228 230Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 3O6R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 164first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
243 254parallel
Strand 4
A
236 240anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
195 201anti-parallel
Strand 4
A
207 213anti-parallel
Strand 5
A
232 233parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
190 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 164first strand
Strand 2
B
103 112anti-parallel
Strand 3
B
244 254parallel
Strand 4
B
236 239anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 151first strand
Strand 2
B
122 126anti-parallel
Strand 3
B
195 200anti-parallel
Strand 4
B
207 213anti-parallel
Strand 5
B
232 233parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
190 191anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il